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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4082 and Ac3H11_4083 are separated by 20 nucleotides
Ac3H11_4083 and Ac3H11_4084 are separated by 158 nucleotides
Ac3H11_4084 and Ac3H11_4085 are separated by 0 nucleotides
Ac3H11_4085 and Ac3H11_4086 are separated by 148 nucleotides
Ac3H11_4082 - Cell division inhibitor, at 331,148 to 332,623
_4082
Ac3H11_4083 - GDP-mannose pyrophosphatase YffH, at 332,644 to 333,273
_4083
Ac3H11_4084 - FIG000557: hypothetical protein co-occurring with RecR, at 333,432 to 334,193
_4084
Ac3H11_4085 - Chromosome initiation inhibitor, at 334,194 to 335,093
_4085
Ac3H11_4086 - Permease of the drug/metabolite transporter (DMT) superfamily, at 335,242 to 336,207
_4086
Group
Condition
Ac3H11
_4082
Ac3H11
_4083
Ac3H11
_4084
Ac3H11
_4085
Ac3H11
_4086
stress
Sisomicin 0.001 mg/ml
-1.1
+0.0
+0.1
-0.1
+0.0
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.2
+0.1
-0.8
+0.0
stress
nitrite 10 mM
-0.1
-0.6
+0.3
-0.2
+0.1
stress
copper (II) chloride 1 mM
-0.5
+0.2
+0.0
-0.4
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.6
+0.1
-0.2
-0.7
+0.1
carbon source
D-Ribose (C)
-0.5
+0.4
+0.3
-0.3
+0.2
stress
Bacitracin 0.008 mg/ml
-0.6
+0.3
+0.3
-0.1
+0.3
stress
Chlorite 0.1 mM
-0.5
+0.2
+0.2
+0.3
+0.3
nitrogen source
D-Alanine (N)
+0.4
+0.2
+0.6
-0.7
+0.3
pH
LB, pH8
+0.3
+0.3
+0.3
-0.2
+0.2
motility
inner cut, R2A soft agar motility assay
-0.3
+0.3
+0.0
+0.8
+0.4
nitrogen source
L-Leucine (N)
+0.6
+0.4
+0.2
+0.2
-0.1
motility
inner cut, R2A soft agar motility assay
-0.0
+0.4
+0.3
+0.2
+0.5
temperature
LB 30C
+0.2
+0.3
+0.2
+0.2
+0.4
carbon source
L-Lactate (C)
+0.1
+0.4
+0.3
+0.3
+0.3
nitrogen source
Uridine (N)
+0.3
+0.2
+0.3
+0.3
+0.3
phage
phage 93.2
+1.3
-0.1
+0.1
-0.1
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.5
+0.2
+0.3
-0.1
+0.5
nitrogen source
L-Threonine (N)
+0.4
+0.4
+0.4
-0.1
+0.3
temperature
LB 23C
+0.0
+0.2
+0.5
+0.4
+0.4
phage
phage 93.1
-0.2
+0.4
+0.5
+0.6
+0.1
nitrogen source
L-Arginine (N)
+0.5
+0.6
+0.3
+0.0
+0.2
stress
Cisplatin 0.005 mg/ml
+0.8
-0.1
+0.3
+0.4
+0.1
temperature
LB 30C
+0.2
+0.4
+0.4
+0.3
+0.5
pH
LB, pH7
+0.3
+0.4
+0.3
+0.4
+0.3
carbon source
D-Galactose (C)
+0.5
+0.5
+0.4
+0.1
+0.3
nitrogen source
Ammonium chloride (N)
+0.5
-0.0
+0.8
+0.5
+0.2
pH
LB, pH10
+0.7
+0.2
+0.8
+0.4
+0.0
motility
inner cut, R2A soft agar motility assay
+0.4
+0.8
-0.2
+1.5
+0.2
pH
LB, pH10
+0.8
+0.3
+0.7
+0.4
+0.7
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