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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_4054 and Ac3H11_4055 are separated by 4 nucleotides
Ac3H11_4055 and Ac3H11_4056 are separated by 58 nucleotides
Ac3H11_4056 and Ac3H11_4057 are separated by 83 nucleotides
Ac3H11_4057 and Ac3H11_4058 are separated by 403 nucleotides
Ac3H11_4054 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 298,469 to 299,737
_4054
Ac3H11_4055 - 5'-nucleotidase (EC 3.1.3.5), at 299,742 to 300,677
_4055
Ac3H11_4056 - Probable calcium-binding signal peptide protein, at 300,736 to 301,095
_4056
Ac3H11_4057 - FIG00581394: hypothetical protein, at 301,179 to 301,556
_4057
Ac3H11_4058 - required for efflux of an amino acid polymer
(from data)
, at 301,960 to 302,469
_4058
Group
Condition
Ac3H11
_4054
Ac3H11
_4055
Ac3H11
_4056
Ac3H11
_4057
Ac3H11
_4058
carbon source
D,L-Lactate (C)
-3.8
-0.3
-0.5
-0.1
-0.5
carbon source
pyruvate (C)
-4.0
-0.2
-0.2
-0.5
-0.2
carbon source
D-Glucose (C)
-4.1
-0.2
-0.4
-0.4
+0.3
carbon source
D-Gluconic Acid (C)
-4.4
-0.1
-0.2
-0.0
-0.1
carbon source
D-Mannose (C)
-3.6
-0.1
-0.3
-0.0
-0.6
carbon source
D-Glucose (C)
-3.7
-0.4
-0.4
-0.3
+0.3
carbon source
L-Lactate (C)
-3.8
-0.1
-0.0
-0.2
-0.3
motility
inner cut, R2A soft agar motility assay
-1.8
-0.8
+0.5
+0.1
-2.5
carbon source
D-Galactose (C)
-2.7
-0.1
-0.2
-0.1
-1.1
carbon source
L-Asparagine (C)
-2.9
-0.1
-0.3
-0.1
-0.7
carbon source
D-Gluconic Acid (C)
-3.3
-0.2
-0.1
-0.3
-0.3
carbon source
L-Lactate (C)
-3.6
-0.2
+0.2
-0.2
-0.4
carbon source
pyruvate (C)
-3.3
+0.0
-0.4
-0.2
-0.4
carbon source
Glycerol (C)
-2.4
-0.4
-0.5
-0.2
-0.5
carbon source
D-Fructose (C)
-2.7
-0.2
-0.2
-0.1
-0.8
carbon source
D-Lactate (C)
-2.8
-0.3
-0.3
-0.1
-0.5
carbon source
D-Lactate (C)
-2.8
-0.1
-0.4
-0.2
-0.2
stress
Nickel (II) chloride 0.8 mM
-2.6
-0.2
-0.2
-0.1
-0.6
stress
Tetracycline 0.0001 mg/ml
-2.8
-0.5
-0.1
-0.2
-0.1
stress
Dimethyl Sulfoxide 6 vol%
-2.1
-0.2
-0.3
-0.2
-0.8
nitrogen source
L-Histidine (N)
-2.5
-0.2
-0.2
-0.3
-0.4
carbon source
L-Arabinose (C)
-3.0
-0.0
-0.4
-0.1
-0.1
stress
Tetracycline 0.00005 mg/ml
-2.7
-0.4
-0.3
-0.1
-0.2
carbon source
D-Galactose (C)
-2.7
-0.3
-0.3
+0.0
-0.3
carbon source
D,L-Lactate (C)
-2.6
-0.2
-0.3
-0.1
-0.4
motility
inner cut, R2A soft agar motility assay
-1.2
+0.5
-0.3
-0.2
-2.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-5.4
-0.1
+0.1
-0.0
+1.9
stress
Cisplatin 0.0025 mg/ml
+1.1
+0.2
-0.8
+0.0
+1.2
pH
LB, pH10
+5.4
-0.7
-0.5
-0.6
+1.1
pH
LB, pH10
+5.3
-0.4
-0.3
-0.0
+0.9
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