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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_4052 and Ac3H11_4053 are separated by 13 nucleotides
Ac3H11_4053 and Ac3H11_4054 overlap by 30 nucleotides
Ac3H11_4054 and Ac3H11_4055 are separated by 4 nucleotides
Ac3H11_4055 and Ac3H11_4056 are separated by 58 nucleotides
Ac3H11_4052 - Bacterial luciferase family protein, at 296,278 to 297,426
_4052
Ac3H11_4053 - COG3210: Large exoproteins involved in heme utilization or adhesion, at 297,440 to 298,498
_4053
Ac3H11_4054 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 298,469 to 299,737
_4054
Ac3H11_4055 - 5'-nucleotidase (EC 3.1.3.5), at 299,742 to 300,677
_4055
Ac3H11_4056 - Probable calcium-binding signal peptide protein, at 300,736 to 301,095
_4056
Group
Condition
Ac3H11
_4052
Ac3H11
_4053
Ac3H11
_4054
Ac3H11
_4055
Ac3H11
_4056
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.0
-5.4
-0.1
+0.1
carbon source
D-Glucose (C)
-0.5
-0.1
-4.1
-0.2
-0.4
carbon source
D,L-Lactate (C)
-0.4
-0.2
-3.8
-0.3
-0.5
carbon source
D-Gluconic Acid (C)
-0.3
-0.1
-4.4
-0.1
-0.2
carbon source
pyruvate (C)
-0.4
-0.2
-4.0
-0.2
-0.2
carbon source
D-Glucose (C)
-0.2
-0.0
-3.7
-0.4
-0.4
carbon source
D-Mannose (C)
-0.2
-0.1
-3.6
-0.1
-0.3
carbon source
pyruvate (C)
-0.4
-0.2
-3.3
+0.0
-0.4
carbon source
L-Lactate (C)
-0.2
+0.1
-3.8
-0.1
-0.0
carbon source
L-Lactate (C)
-0.2
-0.2
-3.6
-0.2
+0.2
carbon source
D-Gluconic Acid (C)
-0.1
-0.1
-3.3
-0.2
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.1
-3.0
-0.0
-0.4
stress
Tetracycline 0.00005 mg/ml
-0.2
-0.2
-2.7
-0.4
-0.3
carbon source
D-Lactate (C)
-0.2
-0.1
-2.8
-0.1
-0.4
carbon source
D-Galactose (C)
-0.2
-0.1
-2.7
-0.3
-0.3
carbon source
Glycerol (C)
-0.2
-0.1
-2.4
-0.4
-0.5
stress
Tetracycline 0.0001 mg/ml
+0.0
-0.1
-2.8
-0.5
-0.1
carbon source
L-Asparagine (C)
-0.1
+0.0
-2.9
-0.1
-0.3
carbon source
D,L-Lactate (C)
-0.2
-0.2
-2.6
-0.2
-0.3
stress
Dimethyl Sulfoxide 6 vol%
-0.6
-0.2
-2.1
-0.2
-0.3
carbon source
D-Fructose (C)
-0.2
-0.1
-2.7
-0.2
-0.2
nitrogen source
L-Histidine (N)
-0.3
-0.2
-2.5
-0.2
-0.2
nitrogen source
L-Arginine (N)
-0.2
-0.3
-1.8
-0.4
-0.7
nitrogen source
L-Serine (N)
-0.2
-0.1
-2.1
-0.3
-0.7
carbon source
D-Lactate (C)
-0.0
+0.0
-2.8
-0.3
-0.3
stress
Nickel (II) chloride 0.8 mM
-0.2
-0.1
-2.6
-0.2
-0.2
carbon source
D-Galactose (C)
-0.1
-0.1
-2.7
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.2
-0.1
-2.3
-0.2
-0.3
pH
LB, pH10
-0.2
-0.1
+5.4
-0.7
-0.5
pH
LB, pH10
-0.4
-0.0
+5.3
-0.4
-0.3
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