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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3980 and Ac3H11_3981 overlap by 4 nucleotides
Ac3H11_3981 and Ac3H11_3982 are separated by 9 nucleotides
Ac3H11_3982 and Ac3H11_3983 overlap by 6 nucleotides
Ac3H11_3983 and Ac3H11_3984 are separated by 42 nucleotides
Ac3H11_3980 - Putative Holliday junction resolvase YqgF, at 211,527 to 211,958
_3980
Ac3H11_3981 - UPF0301 protein YqgE, at 211,955 to 212,554
_3981
Ac3H11_3982 - hypothetical protein, at 212,564 to 212,710
_3982
Ac3H11_3983 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 212,705 to 214,078
_3983
Ac3H11_3984 - Twitching motility protein PilT, at 214,121 to 215,299
_3984
Group
Condition
Ac3H11
_3980
Ac3H11
_3981
Ac3H11
_3982
Ac3H11
_3983
Ac3H11
_3984
pH
LB, pH10
N.D.
-3.3
-0.0
-0.1
-0.1
pH
LB, pH10
N.D.
-2.2
-0.5
-0.1
-0.6
stress
perchlorate 10 mM
N.D.
-2.5
-0.5
-0.1
-0.0
nitrogen source
L-Alanine (N)
N.D.
-1.6
-0.1
-0.6
-0.4
stress
nitrite 10 mM
N.D.
-1.8
-0.6
-0.1
+0.1
stress
Aluminum chloride 4 mM
N.D.
-1.0
-0.6
-0.1
-0.2
stress
Tetracycline 0.0001 mg/ml
N.D.
-1.2
-0.4
-0.2
-0.1
stress
perchlorate 25 mM
N.D.
-1.2
-0.4
-0.1
-0.0
nitrogen source
L-Histidine (N)
N.D.
-0.7
-0.4
-0.4
-0.3
stress
Cisplatin 0.0025 mg/ml
N.D.
-1.3
-0.4
-0.1
+0.0
stress
nitrate 100 mM
N.D.
-1.1
-0.8
+0.0
+0.2
stress
Zinc 1 mM
N.D.
-0.6
-0.5
-0.1
-0.4
stress
Bacitracin 0.008 mg/ml
N.D.
-0.7
-0.4
-0.5
+0.0
stress
nitrite 10 mM
N.D.
-1.1
-0.4
-0.0
-0.1
carbon source
L-Malic (C)
N.D.
-0.3
-0.5
-0.4
-0.2
lb
LB
N.D.
-1.0
+0.1
-0.3
-0.3
temperature
LB 23C
N.D.
-0.7
-0.5
+0.0
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.5
-0.3
-0.2
-0.4
carbon source
succinate (C)
N.D.
-0.8
-0.3
-0.1
-0.1
temperature
LB 30C
N.D.
-0.7
-0.3
-0.2
-0.1
pH
LB, pH8
N.D.
-0.9
-0.2
-0.1
-0.1
phage
phage 93.2
N.D.
+0.3
-0.9
-0.2
-0.2
stress
Aluminum chloride 2 mM
N.D.
-1.1
-0.0
-0.0
+0.1
pH
LB, pH9
N.D.
-1.1
+0.3
-0.0
-0.1
nitrogen source
L-Leucine (N)
N.D.
-0.8
+0.1
+0.2
-0.4
stress
copper (II) chloride 1 mM
N.D.
+0.3
-0.7
-0.2
+0.2
carbon source
D-Galactose (C)
N.D.
-0.5
+0.6
-0.1
-0.2
motility
inner cut, R2A soft agar motility assay
N.D.
+1.5
-0.4
-0.1
-0.1
nitrogen source
D-Alanine (N)
N.D.
+0.7
+0.5
+0.1
-0.2
nitrogen source
Ammonium chloride (N)
N.D.
+1.9
-0.4
-0.0
-0.1
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