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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3954 and Ac3H11_3955 are separated by 6 nucleotides
Ac3H11_3955 and Ac3H11_3956 are separated by 2 nucleotides
Ac3H11_3956 and Ac3H11_3957 are separated by 88 nucleotides
Ac3H11_3957 and Ac3H11_3958 are separated by 64 nucleotides
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550
_3956
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592
_3958
Group
Condition
Ac3H11
_3954
Ac3H11
_3955
Ac3H11
_3956
Ac3H11
_3957
Ac3H11
_3958
pH
LB, pH10
-0.4
-0.9
-0.3
+0.3
-0.5
stress
copper (II) chloride 2 mM
-0.1
-0.6
-1.2
+0.3
-0.1
nitrogen source
Ammonium chloride (N)
-0.3
-0.5
-0.0
-0.7
-0.1
nitrogen source
L-Leucine (N)
-0.5
-0.7
-0.7
+0.2
+0.0
carbon source
L-Arabinose (C)
-0.3
-0.5
-0.3
-0.3
-0.2
carbon source
L-Malic (C)
-0.3
-0.3
-0.5
-0.1
-0.3
phage
phage 93.1
-0.3
-0.7
-0.1
+0.0
-0.3
stress
Bacitracin 0.008 mg/ml
-0.4
+0.1
-0.5
-0.3
-0.2
nitrogen source
L-Arginine (N)
-0.3
-0.0
-0.4
-0.2
-0.3
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.2
-0.8
-0.2
+0.2
nitrogen source
L-Histidine (N)
-0.4
-0.3
-0.4
-0.1
+0.2
motility
inner cut, R2A soft agar motility assay
-0.1
-0.8
+0.3
+0.4
-0.5
motility
inner cut, R2A soft agar motility assay
-0.1
-0.1
-0.7
+0.3
-0.0
lb
LB
-0.2
+0.3
-0.8
+0.0
+0.0
nitrogen source
Uridine (N)
-0.2
+0.3
-0.4
+0.0
-0.2
motility
inner cut, R2A soft agar motility assay
-0.0
+0.3
-0.6
+0.2
-0.4
pH
LB, pH10
+0.3
-0.6
+0.0
+0.1
-0.3
pH
LB, pH9
+0.4
-0.2
-0.3
+0.0
-0.3
lb
LB
-0.1
-0.1
-0.6
+0.2
+0.2
stress
Chlorite 0.1 mM
+0.1
+0.5
-0.3
-0.4
-0.1
lb
LB
+0.3
+0.5
-0.4
-0.3
-0.4
stress
Paraquat dichloride 0.01 mg/ml
-0.9
-0.0
+0.7
+0.1
+0.0
nitrogen source
D-Alanine (N)
+0.2
-0.2
-0.4
+0.2
+0.4
stress
syringaldehyde 2.5 mM
-0.2
+0.3
+0.4
+0.1
-0.2
stress
Cobalt chloride 0.32 mM
-0.4
+0.1
+0.1
+0.6
+0.0
stress
nitrate 45 mM
+0.1
+0.3
+0.5
-0.1
-0.3
carbon source
a-Ketoglutaric (C)
+0.6
-0.5
+0.4
-0.1
+0.2
stress
Cobalt chloride 0.4 mM
+0.2
+1.2
-0.2
-0.3
-0.3
stress
2-Furfuraldehyde 0.06 vol%
-0.2
+0.8
+0.3
+0.2
-0.2
carbon source
D-Lactate (C)
-0.0
+0.5
+0.5
+0.1
-0.1
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