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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3950 and Ac3H11_3951 are separated by 77 nucleotides
Ac3H11_3951 and Ac3H11_3952 are separated by 9 nucleotides
Ac3H11_3952 and Ac3H11_3953 are separated by 199 nucleotides
Ac3H11_3953 and Ac3H11_3954 are separated by 34 nucleotides
Ac3H11_3950 - Catalase (EC 1.11.1.6), at 173,778 to 174,767
_3950
Ac3H11_3951 - Aldose 1-epimerase (EC 5.1.3.3), at 174,845 to 175,957
_3951
Ac3H11_3952 - Permease of the drug/metabolite transporter (DMT) superfamily, at 175,967 to 176,896
_3952
Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673
_3953
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Group
Condition
Ac3H11
_3950
Ac3H11
_3951
Ac3H11
_3952
Ac3H11
_3953
Ac3H11
_3954
pH
LB, pH10
-1.0
+0.0
+0.1
-0.3
-0.4
nitrogen source
L-Histidine (N)
-1.0
-0.1
+0.0
-0.1
-0.4
stress
copper (II) chloride 1 mM
-0.6
-0.1
-0.4
-0.1
-0.2
carbon source
pyruvate (C)
-0.4
-0.5
-0.1
-0.1
-0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.0
+0.7
-0.6
-0.2
-0.9
stress
Zinc 1 mM
+0.3
-0.4
-0.4
-0.4
-0.0
nitrogen source
L-Leucine (N)
+0.1
-0.6
+0.0
+0.2
-0.5
temperature
LB 30C
-0.6
+0.2
-0.1
-0.1
-0.2
pH
LB, pH9
-0.7
-0.3
+0.0
-0.1
+0.4
stress
Cisplatin 0.005 mg/ml
+0.2
-0.5
+0.0
+0.1
-0.5
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.2
-0.1
-0.2
-0.7
stress
syringaldehyde 2.5 mM
+0.5
-0.2
-0.4
-0.1
-0.2
stress
Chlorite 0.1 mM
-0.5
+0.3
-0.0
-0.3
+0.1
phage
phage 93.2
-0.5
-0.1
+0.4
-0.0
+0.1
nitrogen source
Ammonium chloride (N)
+0.1
-0.5
+0.1
+0.4
-0.3
stress
D-Cycloserine 0.05 mg/ml
-1.0
+0.4
+0.6
-0.3
+0.2
stress
Sisomicin 0.001 mg/ml
+0.7
+0.1
-0.6
+0.0
-0.3
stress
nitrate 45 mM
+0.7
-0.6
+0.1
-0.2
+0.1
stress
Bacitracin 0.008 mg/ml
+0.6
+0.1
-0.2
+0.1
-0.4
nitrogen source
L-Alanine (N)
+0.3
-0.6
-0.2
+0.5
+0.2
nitrogen source
L-Isoleucine (N)
+1.2
-0.5
-0.1
+0.1
-0.4
stress
Cobalt chloride 0.32 mM
+0.5
+0.1
-0.1
+0.1
-0.4
pH
LB, pH10
-0.6
+0.4
+0.2
+0.4
+0.3
stress
copper (II) chloride 2 mM
-0.2
+0.6
+0.5
+0.1
-0.1
stress
nitrate 100 mM
+0.6
+0.3
-0.0
-0.2
+0.2
stress
Bacitracin 0.016 mg/ml
+0.9
-0.1
+0.1
+0.0
+0.2
stress
Aluminum chloride 2 mM
+1.0
-0.2
+0.1
+0.1
+0.0
nitrogen source
D-Alanine (N)
+0.7
-0.0
+0.4
-0.2
+0.2
carbon source
a-Ketoglutaric (C)
-0.0
+0.1
+0.3
+0.2
+0.6
stress
perchlorate 10 mM
+1.3
+0.1
+0.0
-0.0
-0.1
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