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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3945 and Ac3H11_3946 overlap by 1 nucleotides
Ac3H11_3946 and Ac3H11_3947 overlap by 20 nucleotides
Ac3H11_3947 and Ac3H11_3948 overlap by 105 nucleotides
Ac3H11_3948 and Ac3H11_3949 are separated by 15 nucleotides
Ac3H11_3945 - Sensory histidine kinase QseC, at 167,801 to 169,138
_3945
Ac3H11_3946 - Two-component system response regulator QseB, at 169,138 to 169,797
_3946
Ac3H11_3947 - hypothetical protein, at 169,778 to 169,900
_3947
Ac3H11_3948 - Ferrichrome-iron receptor, at 169,796 to 172,105
_3948
Ac3H11_3949 - Outer membrane stress sensor protease DegS, at 172,121 to 173,644
_3949
Group
Condition
Ac3H11
_3945
Ac3H11
_3946
Ac3H11
_3947
Ac3H11
_3948
Ac3H11
_3949
stress
Zinc 1 mM
-1.3
-0.2
N.D.
+0.0
-0.1
carbon source
L-Malic (C)
-0.8
-0.2
N.D.
-0.0
-0.3
pH
LB, pH10
-0.7
+0.1
N.D.
-0.1
-0.4
carbon source
L-Arabinose (C)
-0.6
-0.0
N.D.
-0.1
-0.5
stress
nitrate 45 mM
-1.1
+0.1
N.D.
-0.0
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.5
-0.4
N.D.
+0.0
-0.0
stress
Bacitracin 0.008 mg/ml
+0.2
-0.6
N.D.
+0.1
-0.6
stress
sodium fluoride 25 mM
-1.2
+0.0
N.D.
-0.1
+0.4
stress
Cephalothin 0.025 mg/ml
-0.9
-0.0
N.D.
-0.0
+0.2
stress
Cisplatin 0.005 mg/ml
-0.4
-0.5
N.D.
+0.0
+0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.5
+0.1
N.D.
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
-0.8
-0.4
N.D.
+0.1
+0.5
stress
5-Hydroxymethylfurfural 5 mM
-0.8
-0.2
N.D.
+0.2
+0.4
carbon source
a-Ketoglutaric (C)
-0.7
+0.3
N.D.
-0.0
+0.1
carbon source
propionate (C)
+0.3
-0.4
N.D.
+0.0
-0.3
carbon source
D-Fructose (C)
-0.6
+0.3
N.D.
-0.1
+0.1
nitrogen source
Ammonium chloride (N)
+1.2
-0.6
N.D.
-0.2
-0.5
lb
LB
+0.6
-0.4
N.D.
+0.0
-0.4
nitrogen source
L-Histidine (N)
+0.7
+0.1
N.D.
-0.1
-0.8
carbon source
D-Gluconic Acid (C)
-0.6
+0.1
N.D.
-0.0
+0.5
stress
Sisomicin 0.004 mg/ml
-0.5
+0.3
N.D.
+0.1
+0.1
carbon source
a-Ketoglutaric (C)
-0.5
+0.1
N.D.
+0.1
+0.6
nitrogen source
D-Alanine (N)
+0.4
+0.4
N.D.
-0.0
-0.3
nitrogen source
L-Arginine (N)
+0.7
+0.2
N.D.
-0.1
-0.1
lb
LB
+0.4
+0.5
N.D.
-0.0
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.0
+1.1
N.D.
+0.0
-0.3
pH
LB, pH9
+0.8
+0.2
N.D.
+0.0
-0.3
lb
LB
+0.4
+0.1
N.D.
-0.1
+0.4
pH
LB, pH8
+0.5
+0.5
N.D.
-0.1
-0.1
stress
Chlorite 0.1 mM
+0.6
+0.2
N.D.
+0.1
+0.2
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