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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3935 and Ac3H11_3936 are separated by 68 nucleotides
Ac3H11_3936 and Ac3H11_3937 overlap by 4 nucleotides
Ac3H11_3937 and Ac3H11_3938 are separated by 68 nucleotides
Ac3H11_3938 and Ac3H11_3939 are separated by 103 nucleotides
Ac3H11_3935 - FIG006163: hypothetical protein, at 154,253 to 154,669
_3935
Ac3H11_3936 - PspA/IM30 family protein, at 154,738 to 155,481
_3936
Ac3H11_3937 - hypothetical protein, at 155,478 to 155,918
_3937
Ac3H11_3938 - hypothetical protein, at 155,987 to 156,631
_3938
Ac3H11_3939 - Inner membrane protein YqiK, at 156,735 to 158,861
_3939
Group
Condition
Ac3H11
_3935
Ac3H11
_3936
Ac3H11
_3937
Ac3H11
_3938
Ac3H11
_3939
nitrogen source
L-Alanine (N)
-1.3
+0.2
N.D.
-1.1
-1.7
nitrogen source
L-Isoleucine (N)
-1.2
+0.1
N.D.
-0.1
-1.0
pH
LB, pH10
+0.1
-2.1
N.D.
+0.5
-0.2
stress
copper (II) chloride 2 mM
-0.5
-0.2
N.D.
-0.6
-0.4
stress
A22 0.025 mg/ml
-0.3
-0.3
N.D.
-0.6
-0.5
stress
Cobalt chloride 0.32 mM
-0.6
-0.6
N.D.
-0.0
-0.3
stress
copper (II) chloride 1 mM
-0.2
-0.8
N.D.
+0.3
-0.6
stress
sodium fluoride 25 mM
-0.9
-0.6
N.D.
+0.5
-0.2
motility
inner cut, R2A soft agar motility assay
-0.3
-0.8
N.D.
+0.4
-0.4
stress
nitrate 100 mM
+0.7
-0.6
N.D.
-0.8
-0.4
nitrogen source
D-Alanine (N)
-1.4
+0.1
N.D.
+1.0
-0.7
stress
nitrite 10 mM
-1.3
+0.0
N.D.
+0.5
-0.2
carbon source
a-Ketoglutaric (C)
+0.1
+0.4
N.D.
-0.5
-0.9
phage
phage 93.1
+0.8
-0.9
N.D.
-0.1
-0.5
nitrogen source
Uridine (N)
-0.8
-0.0
N.D.
+0.4
-0.2
pH
LB, pH8
-0.8
-0.2
N.D.
+0.5
-0.0
pH
LB, pH7
-0.8
-0.3
N.D.
+0.3
+0.3
nitrogen source
Ammonium chloride (N)
+0.1
-0.8
N.D.
+0.6
-0.3
carbon source
propionate (C)
-0.3
-0.4
N.D.
+0.6
-0.2
stress
Cisplatin 0.0025 mg/ml
+0.3
+0.7
N.D.
-0.4
-0.5
stress
Cisplatin 0.005 mg/ml
+0.0
+0.9
N.D.
-0.3
-0.5
stress
sodium fluoride 35 mM
+0.5
-0.1
N.D.
+0.4
-0.4
carbon source
L-Lactate (C)
-0.5
-0.1
N.D.
+0.5
+0.6
phage
phage 93.1
+1.2
+0.0
N.D.
+0.1
-0.7
stress
Bacitracin 0.016 mg/ml
+0.6
+0.4
N.D.
-0.4
+0.3
stress
perchlorate 10 mM
+1.0
+0.5
N.D.
-0.6
+0.5
carbon source
D-Gluconic Acid (C)
+0.8
+0.4
N.D.
+0.3
+0.0
motility
inner cut, R2A soft agar motility assay
+0.1
+0.6
N.D.
+0.5
+0.5
carbon source
D-Gluconic Acid (C)
+0.1
+0.9
N.D.
+0.6
+0.3
stress
Phosphomycin 0.02 mg/ml
+0.9
+0.1
N.D.
+0.5
+0.9
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