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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3926 and Ac3H11_3927 overlap by 39 nucleotides
Ac3H11_3927 and Ac3H11_3928 are separated by 177 nucleotides
Ac3H11_3928 and Ac3H11_3929 are separated by 49 nucleotides
Ac3H11_3929 and Ac3H11_3930 are separated by 20 nucleotides
Ac3H11_3926 - putative membrane protein, at 142,218 to 143,453
_3926
Ac3H11_3927 - hypothetical protein, at 143,415 to 143,540
_3927
Ac3H11_3928 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 143,718 to 144,380
_3928
Ac3H11_3929 - ATPase associated with various cellular activities, AAA_5, at 144,430 to 145,341
_3929
Ac3H11_3930 - hypothetical protein, at 145,362 to 145,598
_3930
Group
Condition
Ac3H11
_3926
Ac3H11
_3927
Ac3H11
_3928
Ac3H11
_3929
Ac3H11
_3930
nitrogen source
L-Alanine (N)
-1.7
N.D.
-1.5
+0.1
-1.0
lb
LB
-3.4
N.D.
+0.1
-0.0
-0.1
carbon source
pyruvate (C)
-1.5
N.D.
-1.0
-0.2
-0.6
carbon source
D-Gluconic Acid (C)
-2.3
N.D.
-0.3
-0.1
-0.6
stress
Paraquat dichloride 0.01 mg/ml
-0.3
N.D.
+0.1
-0.0
-2.9
carbon source
L-Arabinose (C)
-1.5
N.D.
-0.2
-0.2
-1.2
carbon source
L-Lactate (C)
-2.7
N.D.
-0.2
+0.1
-0.0
stress
sodium fluoride 20 mM
-1.6
N.D.
-0.2
+0.0
-0.8
carbon source
D-Gluconic Acid (C)
-1.9
N.D.
-0.5
-0.1
-0.1
nitrogen source
L-Arginine (N)
-2.0
N.D.
-0.7
-0.0
+0.2
carbon source
pyruvate (C)
-1.4
N.D.
-1.1
-0.0
-0.0
pH
LB, pH10
-2.6
N.D.
+0.1
-0.1
+0.1
stress
nitrite 10 mM
-2.0
N.D.
+0.0
-0.1
-0.3
pH
LB, pH8
-1.5
N.D.
-0.0
-0.2
-0.7
pH
LB, pH7
-1.0
N.D.
-0.2
-0.1
-1.1
pH
LB, pH8
-2.5
N.D.
-0.1
-0.2
+0.5
stress
Nickel (II) chloride 0.6 mM
-2.1
N.D.
+0.0
-0.3
+0.1
pH
LB, pH9
-1.6
N.D.
-0.3
-0.1
-0.2
nitrogen source
Uridine (N)
-1.4
N.D.
-0.5
-0.1
-0.0
lb
LB
-1.6
N.D.
+0.0
+0.0
-0.5
carbon source
L-Lactate (C)
-1.2
N.D.
-0.4
+0.1
-0.5
stress
copper (II) chloride 2 mM
-0.3
N.D.
+0.2
-0.1
-1.8
carbon source
D-Glucose (C)
-0.9
N.D.
-1.1
-0.2
+0.2
nitrogen source
L-tyrosine (N)
-2.0
N.D.
-0.2
+0.0
+0.4
stress
Cobalt chloride 0.16 mM
-2.3
N.D.
-0.1
-0.0
+0.6
pH
LB, pH10
-2.4
N.D.
-0.0
-0.0
+0.9
carbon source
succinate (C)
-1.9
N.D.
+0.2
+0.1
+0.7
carbon source
L-Arabinose (C)
+0.7
N.D.
-0.7
-0.2
-0.6
nitrogen source
L-Isoleucine (N)
-0.9
N.D.
-0.5
-0.2
+1.2
stress
Cobalt chloride 0.4 mM
-1.2
N.D.
+0.5
+0.1
+1.9
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Ac3H11_3928
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