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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3905 and Ac3H11_3906 are separated by 31 nucleotides
Ac3H11_3906 and Ac3H11_3907 are separated by 54 nucleotides
Ac3H11_3907 and Ac3H11_3908 overlap by 4 nucleotides
Ac3H11_3908 and Ac3H11_3909 are separated by 159 nucleotides
Ac3H11_3905 - Ferrichrome-iron receptor, at 122,241 to 124,400
_3905
Ac3H11_3906 - putative iron-regulated membrane protein, at 124,432 to 125,574
_3906
Ac3H11_3907 - hypothetical protein, at 125,629 to 126,459
_3907
Ac3H11_3908 - hypothetical protein, at 126,456 to 126,806
_3908
Ac3H11_3909 - Putative membrane protein, at 126,966 to 127,610
_3909
Group
Condition
Ac3H11
_3905
Ac3H11
_3906
Ac3H11
_3907
Ac3H11
_3908
Ac3H11
_3909
stress
copper (II) chloride 1 mM
+0.1
-0.2
-1.9
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
+0.0
+0.1
-2.0
N.D.
N.D.
lb
LB
+0.0
+0.0
-1.8
N.D.
N.D.
nitrogen source
L-Alanine (N)
+0.1
+0.2
-2.0
N.D.
N.D.
carbon source
D-Lactate (C)
-0.1
-0.2
-1.4
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.1
-0.2
-1.4
N.D.
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.0
-1.4
N.D.
N.D.
carbon source
D-Lactate (C)
-0.0
-0.1
-1.2
N.D.
N.D.
carbon source
Tween 20 (C)
-0.0
-0.1
-1.2
N.D.
N.D.
stress
Fusidic 0.001 mg/ml
-0.0
-0.0
-1.1
N.D.
N.D.
stress
nitrite 10 mM
+0.1
+0.1
-1.3
N.D.
N.D.
carbon source
D,L-Lactate (C)
-0.0
+0.0
-1.0
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
-0.2
+0.0
-0.7
N.D.
N.D.
carbon source
D-Glucose (C)
+0.0
+0.0
-1.0
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
-0.2
+0.1
-0.8
N.D.
N.D.
stress
A22 0.025 mg/ml
+0.1
-0.2
-0.7
N.D.
N.D.
carbon source
Glycerol (C)
+0.0
+0.1
-0.9
N.D.
N.D.
stress
Cobalt chloride 0.16 mM
+0.2
-0.3
-0.7
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
+0.1
-1.0
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
+0.2
-0.7
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
+0.0
+0.5
-0.5
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
+0.0
-0.3
+0.7
N.D.
N.D.
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
-0.2
+0.9
N.D.
N.D.
nitrogen source
L-Arginine (N)
-0.1
-0.3
+1.0
N.D.
N.D.
lb
LB
-0.3
-0.0
+1.0
N.D.
N.D.
stress
nitrate 20 mM
-0.0
-0.1
+1.0
N.D.
N.D.
stress
Ceftazidime 0.01 mg/ml
-0.2
-0.1
+1.2
N.D.
N.D.
stress
Nickel (II) chloride 0.8 mM
+0.0
+0.1
+0.9
N.D.
N.D.
stress
Thallium(I) acetate 0.0006 mg/ml
+0.1
+0.0
+1.1
N.D.
N.D.
stress
Nickel (II) chloride 0.6 mM
-0.0
-0.0
+1.3
N.D.
N.D.
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