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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3895 and Ac3H11_3896 are separated by 373 nucleotides
Ac3H11_3896 and Ac3H11_3897 are separated by 18 nucleotides
Ac3H11_3897 and Ac3H11_3898 are separated by 166 nucleotides
Ac3H11_3898 and Ac3H11_3899 are separated by 96 nucleotides
Ac3H11_3895 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 112,792 to 113,523
_3895
Ac3H11_3896 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 113,897 to 114,424
_3896
Ac3H11_3897 - Transcriptional regulator, LysR family, at 114,443 to 115,375
_3897
Ac3H11_3898 - Acyl dehydratase, at 115,542 to 116,006
_3898
Ac3H11_3899 - Chromosome partitioning protein ParA, at 116,103 to 116,720
_3899
Group
Condition
Ac3H11
_3895
Ac3H11
_3896
Ac3H11
_3897
Ac3H11
_3898
Ac3H11
_3899
nitrogen source
Uridine (N)
+0.1
-0.1
-3.3
-3.7
-0.6
nitrogen source
L-Isoleucine (N)
-0.6
+0.3
-3.8
-1.6
-0.5
nitrogen source
L-Leucine (N)
+0.2
+0.3
-4.0
-1.9
-0.7
nitrogen source
D-Alanine (N)
+0.1
-0.2
-3.2
-2.0
-0.6
nitrogen source
L-Alanine (N)
+0.6
-0.2
-3.2
-2.5
-0.7
carbon source
Tween 20 (C)
+0.4
+0.0
-3.4
-2.0
-0.8
nitrogen source
L-Arginine (N)
-0.1
-0.4
-3.0
-0.9
-0.7
nitrogen source
L-Glutamine (N)
+0.5
+0.3
-2.7
-1.7
-0.7
nitrogen source
Ammonium chloride (N)
+0.5
+0.9
-3.1
-1.5
-0.3
nitrogen source
L-Threonine (N)
+0.7
-0.1
-0.9
-1.3
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.5
-0.2
-1.1
-0.1
stress
Nickel (II) chloride 0.6 mM
-0.2
-0.5
-0.5
-0.8
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.8
-1.3
-0.1
+0.2
+0.4
stress
Bacitracin 0.032 mg/ml
-0.2
-0.8
+0.1
-0.2
-0.2
stress
copper (II) chloride 1 mM
+0.1
-0.3
-0.9
+0.1
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
-0.5
+0.1
+0.0
-0.4
stress
copper (II) chloride 2 mM
-0.0
+0.2
-0.5
-0.8
+0.1
motility
inner cut, R2A soft agar motility assay
-0.4
+0.4
-0.1
-0.6
-0.2
pH
LB, pH5
-0.6
-0.2
+0.0
-0.2
+0.3
stress
Sisomicin 0.001 mg/ml
-0.2
-0.9
-0.0
+0.1
+0.3
lb
LB
-0.7
-0.7
+0.2
+0.2
+0.5
stress
Cisplatin 0.005 mg/ml
-0.5
+0.6
-0.6
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
-0.2
+0.1
+0.3
+0.3
-0.5
motility
inner cut, R2A soft agar motility assay
+0.5
-0.2
-0.3
-0.1
+0.1
pH
LB, pH10
+0.5
+0.3
-0.1
-0.1
-0.4
pH
LB, pH10
+0.4
+1.1
-0.1
-0.9
-0.2
stress
nitrite 10 mM
+0.3
-0.5
-0.1
+0.3
+0.4
phage
phage 93.2
+0.7
-0.3
-0.1
+0.4
-0.0
stress
Paraquat dichloride 0.01 mg/ml
-0.0
-0.3
+0.4
+0.6
+0.5
stress
Chlorite 0.1 mM
+0.3
-0.5
+0.4
+0.7
+0.4
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