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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_3884 and Ac3H11_3885 overlap by 4 nucleotides
Ac3H11_3885 and Ac3H11_3886 are separated by 31 nucleotides
Ac3H11_3886 and Ac3H11_3887 are separated by 30 nucleotides
Ac3H11_3887 and Ac3H11_3888 are separated by 122 nucleotides
Ac3H11_3884 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 103,350 to 104,534
_3884
Ac3H11_3885 - Probable transmembrane protein, at 104,531 to 105,184
_3885
Ac3H11_3886 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 105,216 to 106,022
_3886
Ac3H11_3887 - Probable transmembrane protein, at 106,053 to 106,268
_3887
Ac3H11_3888 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 106,391 to 107,272
_3888
Group
Condition
Ac3H11
_3884
Ac3H11
_3885
Ac3H11
_3886
Ac3H11
_3887
Ac3H11
_3888
carbon source
D-Glucose (C)
-2.1
-0.8
-2.6
+0.0
-1.7
carbon source
pyruvate (C)
-1.5
-0.8
-2.0
-0.5
-1.6
carbon source
pyruvate (C)
-1.9
-0.8
-1.6
+0.2
-1.8
nitrogen source
Ammonium chloride (N)
-2.8
-0.8
-1.1
+0.2
-1.3
carbon source
D-Glucose (C)
-1.2
-0.8
-1.6
-0.3
-1.6
carbon source
D-Gluconic Acid (C)
-1.1
-0.4
-2.0
+0.0
-1.8
stress
perchlorate 10 mM
-0.8
-0.4
-2.6
-0.2
-0.5
carbon source
D-Ribose (C)
-1.7
-0.4
-1.6
+0.1
-1.0
carbon source
D-Gluconic Acid (C)
-1.2
-0.5
-1.3
+0.3
-1.3
nitrogen source
L-Arginine (N)
-1.4
-0.4
-0.6
-0.4
-0.9
carbon source
D-Ribose (C)
-1.2
-0.1
-1.1
-0.0
-1.0
stress
A22 0.025 mg/ml
-0.7
-0.5
-1.1
-0.6
-0.4
nitrogen source
L-Serine (N)
-1.0
-0.6
-0.7
-0.2
-0.7
nitrogen source
L-Histidine (N)
-0.8
-0.3
-1.0
-0.3
-0.7
stress
syringaldehyde 2.5 mM
-0.5
-0.5
-1.1
-0.1
-0.8
carbon source
D-Lactate (C)
-0.9
-0.2
-0.8
-0.3
-0.1
nitrogen source
L-Threonine (N)
-0.7
-0.5
-0.4
-0.2
-0.5
carbon source
a-Ketoglutaric (C)
-0.7
-0.4
-0.7
-0.0
-0.4
stress
perchlorate 25 mM
+0.1
-0.6
-1.1
-0.5
-0.2
phage
phage 93.1
-1.0
-0.2
-0.6
-0.1
-0.3
nitrogen source
Uridine (N)
-0.5
-0.3
-0.3
-0.4
-0.6
stress
Chlorite 0.1 mM
-0.3
-0.9
-0.7
+0.2
-0.3
carbon source
L-Arabinose (C)
-0.4
-0.5
-0.6
+0.1
-0.7
carbon source
a-Ketoglutaric (C)
-0.7
-0.3
-0.5
+0.3
-0.7
nitrogen source
L-Alanine (N)
-0.6
-0.5
-0.4
+0.4
-0.7
stress
Sisomicin 0.001 mg/ml
-0.3
-0.2
-1.6
+0.9
+0.0
stress
nitrite 10 mM
-0.6
-0.4
-0.6
+0.6
+0.0
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.8
+0.2
-1.3
-0.7
stress
copper (II) chloride 2 mM
+0.6
-0.4
+0.8
-0.2
-0.4
pH
LB, pH10
+0.9
+0.0
+0.8
+0.5
+0.3
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