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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_385 and Ac3H11_386 are separated by 100 nucleotides
Ac3H11_386 and Ac3H11_387 are separated by 250 nucleotides
Ac3H11_387 and Ac3H11_388 are separated by 122 nucleotides
Ac3H11_388 and Ac3H11_389 are separated by 24 nucleotides
Ac3H11_385 - Nucleoside-diphosphate-sugar epimerases, at 64,463 to 65,023
_385
Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935
_386
Ac3H11_387 - ABC transporter ATP-binding protein, at 67,186 to 68,847
_387
Ac3H11_388 - Thymidine phosphorylase (EC 2.4.2.4), at 68,970 to 71,456
_388
Ac3H11_389 - TRAP transporter solute receptor, TAXI family, at 71,481 to 72,848
_389
Group
Condition
Ac3H11
_385
Ac3H11
_386
Ac3H11
_387
Ac3H11
_388
Ac3H11
_389
nitrogen source
L-Alanine (N)
+0.0
-3.8
N.D.
-0.1
-0.2
stress
Cisplatin 0.005 mg/ml
-0.3
-3.4
N.D.
+0.0
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.2
-2.2
N.D.
-0.3
-0.2
lb
LB
-0.3
-2.5
N.D.
+0.1
-0.0
stress
Zinc 1 mM
+0.1
-2.6
N.D.
+0.0
-0.2
stress
Sisomicin 0.001 mg/ml
+0.0
-2.6
N.D.
+0.1
-0.1
nitrogen source
D-Alanine (N)
+0.2
-2.3
N.D.
+0.2
-0.4
lb
LB
-0.0
-2.5
N.D.
+0.2
+0.0
stress
perchlorate 10 mM
+0.0
-2.0
N.D.
+0.2
-0.4
stress
Cobalt chloride 0.32 mM
-0.0
-2.0
N.D.
+0.1
+0.1
temperature
LB 30C
+0.0
-2.0
N.D.
+0.0
+0.1
nitrogen source
L-Phenylalanine (N)
-0.0
-1.5
N.D.
-0.0
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
-2.0
N.D.
+0.2
-0.1
stress
Bacitracin 0.008 mg/ml
+0.1
-2.0
N.D.
+0.1
+0.1
stress
copper (II) chloride 1 mM
+0.1
-2.0
N.D.
+0.2
-0.0
motility
inner cut, R2A soft agar motility assay
+0.2
-1.7
N.D.
+0.0
-0.2
stress
copper (II) chloride 2 mM
+0.2
-1.7
N.D.
+0.2
-0.3
stress
Nickel (II) chloride 0.6 mM
-0.1
-1.5
N.D.
+0.1
-0.0
carbon source
D-Gluconic Acid (C)
+0.2
-1.5
N.D.
-0.1
+0.0
nitrogen source
L-Arginine (N)
+0.1
-1.2
N.D.
-0.3
-0.1
stress
Sisomicin 0.0005 mg/ml
+0.1
-1.6
N.D.
+0.2
+0.0
stress
Cobalt chloride 0.32 mM
+0.2
-1.8
N.D.
+0.2
+0.0
stress
A22 0.025 mg/ml
+0.1
-1.4
N.D.
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
-1.3
N.D.
+0.1
+0.2
stress
Doxycycline hyclate 0.000025 mg/ml
-0.2
+1.5
N.D.
+0.0
-0.1
nitrogen source
L-tyrosine (N)
-0.0
+1.5
N.D.
+0.1
-0.0
phage
phage 93.1
+0.2
+1.8
N.D.
+0.2
+0.1
nitrogen source
Ammonium chloride (N)
+0.4
+1.9
N.D.
+0.1
+0.2
pH
LB, pH10
+0.1
+2.7
N.D.
+0.0
+0.1
pH
LB, pH10
+0.1
+2.8
N.D.
+0.3
-0.2
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