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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3841 and Ac3H11_3842 are separated by 150 nucleotides
Ac3H11_3842 and Ac3H11_3843 are separated by 268 nucleotides
Ac3H11_3843 and Ac3H11_3844 are separated by 2 nucleotides
Ac3H11_3844 and Ac3H11_3845 overlap by 35 nucleotides
Ac3H11_3841 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 57,593 to 58,315
_3841
Ac3H11_3842 - Large protein containing transglutaminase-like domain, at 58,466 to 61,963
_3842
Ac3H11_3843 - Protein containing domains DUF404, DUF407, DUF403, at 62,232 to 64,901
_3843
Ac3H11_3844 - Protein containing transglutaminase-like domain, putative cysteine protease, at 64,904 to 65,872
_3844
Ac3H11_3845 - Protein containing domains DUF403, at 65,838 to 66,797
_3845
Group
Condition
Ac3H11
_3841
Ac3H11
_3842
Ac3H11
_3843
Ac3H11
_3844
Ac3H11
_3845
nitrogen source
L-Histidine (N)
-1.0
-0.1
-0.1
+0.1
-0.4
nitrogen source
L-Isoleucine (N)
-1.8
-0.1
-0.1
-0.2
+0.8
nitrogen source
L-Alanine (N)
-0.6
+0.0
-0.0
-0.3
-0.4
carbon source
L-Malic (C)
-0.8
-0.2
-0.0
-0.1
-0.2
carbon source
pyruvate (C)
-0.6
-0.2
-0.0
-0.2
-0.3
stress
nitrate 20 mM
-1.0
-0.1
-0.0
-0.1
-0.1
stress
D-Cycloserine 0.05 mg/ml
-1.3
+0.1
-0.3
+0.0
+0.2
stress
Dimethyl Sulfoxide 6 vol%
-0.8
-0.1
-0.1
-0.0
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.1
-0.3
-0.2
-0.6
phage
phage 93.2
-0.3
-0.1
+0.1
+0.0
-0.7
stress
Fusidic 0.001 mg/ml
-0.6
+0.0
-0.1
+0.1
-0.4
nitrogen source
L-tyrosine (N)
+0.3
-0.0
-0.3
-0.5
-0.3
temperature
LB 23C
-1.0
-0.0
+0.1
+0.1
-0.0
stress
Paraquat dichloride 0.01 mg/ml
-0.9
+0.1
+0.2
-0.1
-0.1
motility
inner cut, R2A soft agar motility assay
-1.0
-0.1
-0.0
+0.3
+0.1
stress
Cisplatin 0.005 mg/ml
-0.7
-0.1
-0.3
+0.1
+0.2
pH
LB, pH10
-0.4
+0.2
-0.1
-0.6
+0.3
stress
Cobalt chloride 0.4 mM
-0.5
-0.1
+0.0
-0.3
+0.3
carbon source
D-Fructose (C)
-0.8
+0.0
+0.0
-0.1
+0.3
nitrogen source
Ammonium chloride (N)
-1.3
-0.1
-0.2
+0.4
+0.6
carbon source
L-Lactate (C)
-0.6
-0.0
-0.0
-0.1
+0.4
stress
Phosphomycin 0.06 mg/ml
+0.4
+0.1
-0.1
-0.1
-0.5
motility
inner cut, R2A soft agar motility assay
+0.7
-0.2
-0.0
+0.1
-0.8
nitrogen source
L-Arginine (N)
+0.6
-0.1
-0.2
-0.2
-0.2
stress
nitrite 10 mM
+0.8
-0.1
+0.1
-0.2
-0.1
phage
phage 93.1
+0.6
-0.1
+0.3
+0.0
-0.2
carbon source
D-Gluconic Acid (C)
+0.6
-0.1
-0.1
-0.2
+0.3
stress
Sisomicin 0.0005 mg/ml
+0.8
-0.1
-0.0
+0.1
+0.2
lb
LB
+0.9
-0.2
+0.2
+0.1
+0.1
stress
copper (II) chloride 2 mM
+2.2
+0.2
+0.0
-0.2
-0.6
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