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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_381 and Ac3H11_566 are separated by 178 nucleotides
Ac3H11_566 and Ac3H11_382 are separated by 194 nucleotides
Ac3H11_382 and Ac3H11_383 are separated by 305 nucleotides
Ac3H11_383 and Ac3H11_384 are separated by 156 nucleotides
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Ac3H11_566 - tRNA-Arg-TCT, at 58,984 to 59,057
_566
Ac3H11_382 - TrkA-N:Sodium/hydrogen exchanger, at 59,252 to 60,991
_382
Ac3H11_383 - FIG01198699: hypothetical protein, at 61,297 to 63,186
_383
Ac3H11_384 - possible endonuclease/exonuclease/phosphatase family protein, at 63,343 to 64,386
_384
Group
Condition
Ac3H11
_381
Ac3H11
_566
Ac3H11
_382
Ac3H11
_383
Ac3H11
_384
nitrogen source
Uridine (N)
+0.0
N.D.
-0.1
-2.9
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.0
N.D.
-0.1
-1.1
+0.1
carbon source
D-Glucose (C)
-0.2
N.D.
+0.0
-0.5
-0.3
stress
Cisplatin 0.0025 mg/ml
-0.1
N.D.
-0.4
+0.1
-0.5
carbon source
D-Gluconic Acid (C)
-0.3
N.D.
-0.1
-0.6
+0.1
carbon source
D-Gluconic Acid (C)
-0.0
N.D.
-0.1
-0.8
+0.0
carbon source
pyruvate (C)
-0.0
N.D.
+0.0
-0.6
-0.2
nitrogen source
L-Alanine (N)
-0.6
N.D.
-0.3
+0.2
+0.1
stress
Nickel (II) chloride 0.8 mM
+0.0
N.D.
-0.3
-0.4
+0.1
carbon source
pyruvate (C)
-0.2
N.D.
+0.0
-0.5
+0.1
stress
Cisplatin 0.005 mg/ml
-0.2
N.D.
-0.3
+0.3
-0.4
motility
inner cut, R2A soft agar motility assay
-0.0
N.D.
+0.3
-0.3
-0.5
carbon source
pyruvate (C)
+0.2
N.D.
-0.1
-0.5
-0.2
carbon source
a-Ketoglutaric (C)
-0.2
N.D.
+0.4
-0.3
-0.2
carbon source
a-Ketoglutaric (C)
-0.2
N.D.
+0.2
-0.5
+0.1
carbon source
D-Ribose (C)
-0.1
N.D.
+0.1
-0.4
+0.1
stress
sodium fluoride 25 mM
-0.1
N.D.
+0.0
-0.5
+0.3
pH
LB, pH10
-0.3
N.D.
+0.1
-0.3
+0.2
stress
Bacitracin 0.032 mg/ml
-0.2
N.D.
+0.3
-0.3
-0.0
carbon source
propionate (C)
+0.1
N.D.
+0.1
-0.5
+0.2
stress
copper (II) chloride 2 mM
+0.3
N.D.
+0.0
-0.3
-0.2
lb
LB
+0.2
N.D.
+0.1
+0.3
-0.3
lb
LB
+0.1
N.D.
+0.2
+0.5
-0.4
lb
LB
-0.1
N.D.
+0.5
+0.2
+0.0
motility
inner cut, R2A soft agar motility assay
+0.2
N.D.
+0.5
+0.1
-0.1
nitrogen source
D-Alanine (N)
-0.2
N.D.
+0.2
+0.4
+0.2
stress
Fusidic 0.001 mg/ml
+0.0
N.D.
+0.5
+0.1
+0.2
motility
inner cut, R2A soft agar motility assay
+0.5
N.D.
+0.4
-0.0
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.2
N.D.
+0.3
+0.5
-0.1
phage
phage 93.2
+0.3
N.D.
+0.4
+0.2
+0.2
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