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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3806 and Ac3H11_3807 overlap by 8 nucleotides
Ac3H11_3807 and Ac3H11_3808 are separated by 65 nucleotides
Ac3H11_3808 and Ac3H11_3809 overlap by 4 nucleotides
Ac3H11_3809 and Ac3H11_3810 are separated by 175 nucleotides
Ac3H11_3806 - FIG00433900: hypothetical protein, at 19,487 to 20,203
_3806
Ac3H11_3807 - FIG00431662: hypothetical protein, at 20,196 to 20,756
_3807
Ac3H11_3808 - tungsten-containing formate dehydrogenase alpha subunit, at 20,822 to 23,707
_3808
Ac3H11_3809 - tungsten-containing formate dehydrogenase beta subunit, at 23,704 to 25,611
_3809
Ac3H11_3810 - Transcriptional regulator, TetR family, at 25,787 to 26,407
_3810
Group
Condition
Ac3H11
_3806
Ac3H11
_3807
Ac3H11
_3808
Ac3H11
_3809
Ac3H11
_3810
stress
A22 0.025 mg/ml
-0.0
-0.5
-0.7
+0.2
-1.6
stress
Cisplatin 0.005 mg/ml
-0.1
+1.1
-0.5
+0.2
-3.2
stress
Sisomicin 0.001 mg/ml
-0.4
+0.0
-0.5
+0.2
-1.7
stress
Cisplatin 0.0025 mg/ml
-0.0
+0.0
-0.7
+0.1
-1.4
lb
LB
-0.1
-0.2
-0.3
+0.3
-1.6
carbon source
D-Lactate (C)
-0.1
-0.2
+0.1
-0.1
-1.4
stress
nitrate 100 mM
+0.2
+0.3
-0.3
+0.4
-2.1
stress
perchlorate 25 mM
+0.3
-0.2
-0.6
+0.2
-1.1
pH
LB, pH8
+0.1
+0.2
-0.1
-0.0
-1.4
motility
inner cut, R2A soft agar motility assay
+0.0
+0.4
+0.2
+0.2
-2.0
carbon source
L-Lactate (C)
-0.1
+0.1
+0.1
+0.0
-1.3
stress
Bacitracin 0.032 mg/ml
+0.1
+0.0
-0.5
+0.2
-0.8
stress
nitrite 10 mM
-0.1
+0.3
-0.3
+0.2
-1.0
nitrogen source
L-Histidine (N)
+0.1
+0.0
-1.0
-1.0
+0.9
stress
Zinc 1 mM
+0.0
+0.3
-0.4
-0.0
-0.8
stress
Sisomicin 0.0005 mg/ml
-0.0
+0.4
-0.2
+0.1
-1.0
phage
phage 93.1
-0.0
+0.3
+0.1
+0.1
-1.0
carbon source
D-Ribose (C)
-0.3
-0.3
-0.3
+0.1
+0.7
stress
copper (II) chloride 2 mM
+0.4
+0.5
-0.2
+0.0
-0.8
carbon source
L-Arabinose (C)
-0.3
-0.4
+0.1
-0.1
+0.8
pH
LB, pH10
-0.7
+0.9
+0.3
-0.2
-0.1
carbon source
D-Ribose (C)
-0.5
-0.5
-0.1
-0.0
+1.3
lb
LB
-0.1
+0.1
-0.7
+0.1
+0.9
stress
Chlorite 0.1 mM
+0.1
-0.2
-0.6
+0.3
+0.9
stress
Nickel (II) chloride 0.6 mM
-0.1
-0.1
-0.3
+0.1
+1.0
nitrogen source
L-Alanine (N)
-0.4
+0.5
-0.2
-0.1
+0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.4
-0.2
+0.1
+0.8
nitrogen source
L-tyrosine (N)
+1.1
+0.9
-0.1
-0.1
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.4
+0.1
-0.2
+0.0
+1.8
nitrogen source
L-Threonine (N)
+0.3
+0.2
+0.1
+0.0
+1.6
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