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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3804 and Ac3H11_3805 overlap by 4 nucleotides
Ac3H11_3805 and Ac3H11_3806 overlap by 41 nucleotides
Ac3H11_3806 and Ac3H11_3807 overlap by 8 nucleotides
Ac3H11_3807 and Ac3H11_3808 are separated by 65 nucleotides
Ac3H11_3804 - Putative formate dehydrogenase-specific chaperone, at 16,826 to 17,461
_3804
Ac3H11_3805 - Iron-sulfur cluster-binding protein, at 17,458 to 19,527
_3805
Ac3H11_3806 - FIG00433900: hypothetical protein, at 19,487 to 20,203
_3806
Ac3H11_3807 - FIG00431662: hypothetical protein, at 20,196 to 20,756
_3807
Ac3H11_3808 - tungsten-containing formate dehydrogenase alpha subunit, at 20,822 to 23,707
_3808
Group
Condition
Ac3H11
_3804
Ac3H11
_3805
Ac3H11
_3806
Ac3H11
_3807
Ac3H11
_3808
carbon source
D-Ribose (C)
-0.5
-0.2
-0.5
-0.5
-0.1
carbon source
D-Ribose (C)
-0.4
-0.3
-0.3
-0.3
-0.3
stress
A22 0.025 mg/ml
-0.1
+0.1
-0.0
-0.5
-0.7
lb
LB
-0.2
-0.2
-0.1
+0.1
-0.7
carbon source
L-Arabinose (C)
-0.2
-0.2
-0.3
-0.4
+0.1
stress
Sisomicin 0.001 mg/ml
-0.0
+0.1
-0.4
+0.0
-0.5
stress
Chlorite 0.1 mM
-0.2
+0.2
+0.1
-0.2
-0.6
nitrogen source
L-Histidine (N)
+0.0
+0.1
+0.1
+0.0
-1.0
stress
Bacitracin 0.032 mg/ml
-0.2
-0.1
+0.1
+0.0
-0.5
stress
perchlorate 25 mM
-0.0
-0.1
+0.3
-0.2
-0.6
stress
Cobalt chloride 0.4 mM
-0.1
+0.2
-0.4
+0.2
-0.4
nitrogen source
L-Alanine (N)
-0.2
-0.2
-0.4
+0.5
-0.2
stress
Bacitracin 0.008 mg/ml
+0.1
+0.0
+0.2
-0.2
-0.5
stress
Phosphomycin 0.02 mg/ml
-0.1
+0.1
-0.3
+0.2
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.0
+0.1
+0.2
-0.3
-0.3
stress
Zinc 1 mM
-0.1
-0.2
+0.0
+0.3
-0.4
stress
Phosphomycin 0.06 mg/ml
-0.1
+0.1
+0.4
-0.1
-0.4
stress
Bacitracin 0.016 mg/ml
-0.1
+0.1
-0.1
+0.4
-0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.4
+0.1
+0.4
+0.1
-0.2
pH
LB, pH10
+0.8
+0.3
-0.4
-0.5
+0.1
stress
Nickel (II) chloride 0.6 mM
-0.0
+0.3
+0.4
+0.0
-0.4
stress
copper (II) chloride 2 mM
-0.2
-0.1
+0.4
+0.5
-0.2
stress
Cobalt chloride 0.32 mM
-0.0
+0.2
+0.6
-0.1
-0.1
phage
phage 93.2
+0.4
+0.0
+0.4
+0.1
-0.1
stress
Cisplatin 0.005 mg/ml
+0.3
+0.3
-0.1
+1.1
-0.5
carbon source
succinate (C)
+0.2
+0.3
+0.1
+0.3
+0.1
nitrogen source
L-Threonine (N)
+0.5
+0.2
+0.3
+0.2
+0.1
nitrogen source
Ammonium chloride (N)
-0.0
+0.3
+1.0
+0.0
+0.2
pH
LB, pH10
+0.8
+0.4
-0.7
+0.9
+0.3
nitrogen source
L-tyrosine (N)
+1.2
+1.2
+1.1
+0.9
-0.1
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