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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_3801 and Ac3H11_3802 overlap by 4 nucleotides
Ac3H11_3802 and Ac3H11_3803 are separated by 23 nucleotides
Ac3H11_3803 and Ac3H11_3804 are separated by 370 nucleotides
Ac3H11_3804 and Ac3H11_3805 overlap by 4 nucleotides
Ac3H11_3801 - putative lipoprotein, at 12,609 to 12,848
_3801
Ac3H11_3802 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 12,845 to 13,462
_3802
Ac3H11_3803 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 13,486 to 16,455
_3803
Ac3H11_3804 - Putative formate dehydrogenase-specific chaperone, at 16,826 to 17,461
_3804
Ac3H11_3805 - Iron-sulfur cluster-binding protein, at 17,458 to 19,527
_3805
Group
Condition
Ac3H11
_3801
Ac3H11
_3802
Ac3H11
_3803
Ac3H11
_3804
Ac3H11
_3805
nitrogen source
L-Alanine (N)
-1.2
-1.1
+0.0
-0.2
-0.2
carbon source
L-Arabinose (C)
-0.5
-0.3
-0.4
-0.5
-0.2
stress
copper (II) chloride 2 mM
-1.1
-0.2
-0.1
-0.2
-0.1
carbon source
D-Ribose (C)
-0.3
+0.0
-0.3
-0.5
-0.2
carbon source
D-Ribose (C)
-0.3
+0.0
-0.2
-0.4
-0.3
lb
LB
-0.9
+0.2
+0.1
-0.2
-0.2
nitrogen source
L-Histidine (N)
-0.9
-0.0
-0.0
+0.0
+0.1
nitrogen source
L-Arginine (N)
-0.8
+0.1
-0.1
+0.1
-0.1
nitrogen source
Ammonium chloride (N)
-1.2
+0.4
-0.1
-0.0
+0.3
stress
Nickel (II) chloride 0.8 mM
-1.0
+0.2
+0.1
+0.1
+0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-0.6
+0.1
-0.4
+0.1
phage
phage 93.1
-0.8
-0.1
-0.1
+0.2
+0.3
stress
D-Cycloserine 0.05 mg/ml
-0.6
+0.3
-0.2
+0.0
+0.1
stress
sodium fluoride 25 mM
+0.5
-0.3
-0.0
-0.1
-0.1
stress
Nickel (II) chloride 0.6 mM
-0.4
+0.3
+0.1
+0.3
-0.1
stress
Cisplatin 0.005 mg/ml
-0.3
-0.1
+0.2
+0.3
+0.3
stress
Cobalt chloride 0.32 mM
-0.4
+0.5
+0.1
-0.0
+0.2
pH
LB, pH9
-0.6
+0.4
+0.2
+0.2
+0.2
phage
phage 93.2
+0.4
-0.2
+0.1
+0.4
+0.0
pH
LB, pH10
-1.2
+0.4
+0.4
+0.8
+0.4
carbon source
a-Ketoglutaric (C)
+0.8
-0.2
+0.1
+0.2
+0.1
carbon source
D,L-Lactate (C)
+0.8
+0.1
+0.1
+0.1
-0.1
stress
Cobalt chloride 0.4 mM
+0.4
+0.5
+0.1
-0.1
+0.2
stress
nitrate 45 mM
+0.5
+0.3
+0.1
+0.2
+0.2
carbon source
L-Lactate (C)
+0.3
+0.2
+0.2
+0.3
+0.2
carbon source
a-Ketoglutaric (C)
+0.9
+0.4
+0.1
+0.1
-0.0
nitrogen source
L-Threonine (N)
+0.1
+0.6
+0.2
+0.5
+0.2
pH
LB, pH10
-0.2
+0.7
+0.5
+0.8
+0.3
carbon source
D-Lactate (C)
+2.3
+0.1
+0.2
+0.0
-0.0
nitrogen source
L-tyrosine (N)
-1.3
+1.1
+1.2
+1.2
+1.2
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