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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3795 and Ac3H11_3796 are separated by 63 nucleotides
Ac3H11_3796 and Ac3H11_3797 are separated by 47 nucleotides
Ac3H11_3797 and Ac3H11_3798 are separated by 338 nucleotides
Ac3H11_3798 and Ac3H11_3799 are separated by 140 nucleotides
Ac3H11_3795 - ABC transporter, permease protein, putative, at 3,716 to 6,235
_3795
Ac3H11_3796 - MORN repeat family protein, at 6,299 to 7,981
_3796
Ac3H11_3797 - Formate dehydrogenase chain D (EC 1.2.1.2), at 8,029 to 8,925
_3797
Ac3H11_3798 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 9,264 to 10,844
_3798
Ac3H11_3799 - putative exported protein, at 10,985 to 11,338
_3799
Group
Condition
Ac3H11
_3795
Ac3H11
_3796
Ac3H11
_3797
Ac3H11
_3798
Ac3H11
_3799
stress
Cisplatin 0.005 mg/ml
+0.1
-0.4
-0.4
-0.1
-0.9
stress
Cisplatin 0.0025 mg/ml
-0.2
-0.1
-0.3
+0.0
-0.8
stress
Bacitracin 0.008 mg/ml
-0.2
-0.4
-0.3
-0.0
-0.4
stress
perchlorate 25 mM
-0.3
-0.0
-0.9
+0.1
-0.2
nitrogen source
L-Histidine (N)
-0.1
-0.0
-0.9
-0.2
-0.2
lb
LB
+0.2
-0.1
-1.0
+0.2
-0.4
stress
perchlorate 10 mM
-0.1
+0.0
-1.1
+0.1
+0.1
stress
nitrite 10 mM
+0.1
-0.1
-0.7
+0.1
-0.5
stress
Chlorite 0.1 mM
-0.1
-0.3
-0.5
+0.2
-0.4
stress
Sisomicin 0.001 mg/ml
-0.1
+0.2
-0.5
+0.1
-0.5
stress
Phosphomycin 0.02 mg/ml
-0.1
-0.1
-0.5
+0.1
-0.3
stress
Zinc 1 mM
+0.2
-0.4
-0.5
+0.0
+0.1
stress
nitrate 100 mM
+0.0
+0.2
-0.7
+0.1
-0.1
nitrogen source
D-Alanine (N)
+0.1
-0.3
+0.4
-0.1
-0.3
stress
copper (II) chloride 2 mM
+0.1
+0.3
+0.1
-0.3
-0.4
pH
LB, pH9
-0.1
+0.0
+0.5
-0.2
-0.3
nitrogen source
L-Arginine (N)
+0.1
-0.0
+0.4
+0.1
-0.5
phage
phage 93.2
+0.1
+0.2
+0.3
-0.2
-0.3
nitrogen source
L-Threonine (N)
-0.1
+0.1
+0.6
-0.2
-0.3
pH
LB, pH10
-0.3
+0.1
+0.7
-0.0
-0.3
carbon source
propionate (C)
+0.4
+0.0
+0.2
+0.0
-0.3
pH
LB, pH10
+0.0
+0.3
+0.8
-0.1
-0.6
motility
inner cut, R2A soft agar motility assay
+0.0
-0.3
+0.4
+0.3
+0.1
nitrogen source
Ammonium chloride (N)
+0.2
+0.0
+0.5
-0.4
+0.1
stress
Nickel (II) chloride 0.6 mM
-0.1
+0.0
+0.8
-0.0
-0.2
carbon source
D-Gluconic Acid (C)
+0.2
+0.3
+0.4
+0.1
-0.2
carbon source
a-Ketoglutaric (C)
+0.2
+0.5
+0.0
+0.2
-0.2
carbon source
a-Ketoglutaric (C)
+0.1
+0.7
+0.2
-0.1
+0.1
carbon source
succinate (C)
+0.2
+0.1
+0.4
+0.2
+0.2
nitrogen source
L-tyrosine (N)
+0.3
+0.2
+1.6
-0.0
+0.2
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