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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3780 and Ac3H11_3781 are separated by 118 nucleotides
Ac3H11_3781 and Ac3H11_3782 are separated by 4 nucleotides
Ac3H11_3782 and Ac3H11_3783 are separated by 43 nucleotides
Ac3H11_3783 and Ac3H11_3784 are separated by 194 nucleotides
Ac3H11_3780 - Phage (Mu-like) virion morphogenesis protein, at 28,630 to 29,907
_3780
Ac3H11_3781 - hypothetical protein, at 30,026 to 30,481
_3781
Ac3H11_3782 - hypothetical protein, at 30,486 to 30,686
_3782
Ac3H11_3783 - Phage protein, at 30,730 to 31,311
_3783
Ac3H11_3784 - hypothetical protein, at 31,506 to 31,637
_3784
Group
Condition
Ac3H11
_3780
Ac3H11
_3781
Ac3H11
_3782
Ac3H11
_3783
Ac3H11
_3784
stress
copper (II) chloride 2 mM
-0.2
-3.5
-1.3
+0.2
N.D.
stress
Chlorite 0.1 mM
+0.1
-3.5
-0.8
-0.0
N.D.
stress
Cobalt chloride 0.32 mM
-0.0
-3.5
+0.0
-0.1
N.D.
lb
LB
-0.1
-2.7
-0.5
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.0
-3.4
+0.4
-0.3
N.D.
stress
Paraquat dichloride 0.01 mg/ml
+0.2
-3.4
-0.4
+0.5
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.1
-3.4
+0.2
+0.3
N.D.
stress
copper (II) chloride 1 mM
+0.1
-1.8
-0.7
-0.4
N.D.
nitrogen source
L-Isoleucine (N)
-0.1
-2.2
-0.2
+0.3
N.D.
stress
Bacitracin 0.008 mg/ml
+0.0
-2.7
+0.1
+0.3
N.D.
pH
LB, pH5
-0.2
-2.0
-0.1
+0.1
N.D.
carbon source
L-Glutamine (C)
-0.2
-1.7
+0.2
-0.3
N.D.
carbon source
D-Ribose (C)
+0.2
-1.3
-0.5
-0.2
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.1
-2.5
+0.7
+0.2
N.D.
phage
phage 93.2
+0.2
-1.9
+0.4
-0.3
N.D.
stress
Zinc 1 mM
+0.0
-1.4
+0.3
-0.4
N.D.
stress
Fusidic 0.001 mg/ml
+0.2
-1.0
-0.4
-0.2
N.D.
stress
Cobalt chloride 0.32 mM
+0.1
-1.2
-0.3
+0.0
N.D.
stress
nitrite 10 mM
+0.2
-1.1
-0.2
-0.2
N.D.
stress
Ceftazidime 0.01 mg/ml
+0.3
-1.3
-0.1
-0.2
N.D.
stress
D-Cycloserine 0.05 mg/ml
+0.3
-2.1
+0.5
+0.1
N.D.
stress
sodium fluoride 20 mM
+0.2
-1.2
+0.2
-0.1
N.D.
lb
LB
+0.2
-1.0
-0.2
+0.2
N.D.
stress
Sisomicin 0.004 mg/ml
+0.2
-1.0
-0.2
+0.5
N.D.
nitrogen source
Ammonium chloride (N)
+0.3
+0.5
-0.0
-1.1
N.D.
carbon source
casaminos (C)
+0.2
-0.9
+0.5
-0.1
N.D.
temperature
LB 30C
-0.1
+0.9
-0.5
-0.1
N.D.
stress
Cisplatin 0.005 mg/ml
-0.0
+1.0
-0.4
-0.5
N.D.
nitrogen source
L-Alanine (N)
+0.8
-0.9
-0.1
+0.4
N.D.
stress
Bacitracin 0.032 mg/ml
+0.3
+0.6
-0.5
+0.2
N.D.
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