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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3737 and Ac3H11_3738 overlap by 4 nucleotides
Ac3H11_3738 and Ac3H11_3739 overlap by 4 nucleotides
Ac3H11_3739 and Ac3H11_3740 are separated by 148 nucleotides
Ac3H11_3740 and Ac3H11_3741 are separated by 239 nucleotides
Ac3H11_3737 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 95,939 to 96,649
_3737
Ac3H11_3738 - FIG00641944: hypothetical protein, at 96,646 to 97,923
_3738
Ac3H11_3739 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 97,920 to 98,831
_3739
Ac3H11_3740 - Gluconate permease, at 98,980 to 100,350
_3740
Ac3H11_3741 - Mobile element protein, at 100,590 to 101,066
_3741
Group
Condition
Ac3H11
_3737
Ac3H11
_3738
Ac3H11
_3739
Ac3H11
_3740
Ac3H11
_3741
pH
LB, pH10
-0.4
+0.0
-0.1
+0.0
-2.6
stress
Bacitracin 0.032 mg/ml
-0.3
-0.4
-0.0
-0.1
-1.5
pH
LB, pH10
-0.3
+0.4
-0.3
-0.0
-1.9
nitrogen source
L-Isoleucine (N)
+0.0
-0.2
-0.3
-0.8
-0.5
carbon source
a-Ketoglutaric (C)
-0.2
+0.4
+0.1
-0.7
-1.3
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.4
+0.3
-0.5
-1.7
nitrogen source
L-Leucine (N)
+0.1
-0.1
-0.4
-0.3
-0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
-0.5
-0.4
-0.2
-0.4
phage
phage 93.1
+0.1
-0.0
-0.1
+0.1
-1.4
nitrogen source
L-Arginine (N)
-0.1
+0.2
-0.1
-0.7
-0.5
carbon source
D-Fructose (C)
+0.3
-0.3
+0.0
-0.1
-0.9
carbon source
D-Sorbitol (C)
+0.2
+0.3
-0.1
+0.1
-0.9
lb
LB
-0.2
+0.3
-0.5
-0.3
+0.3
nitrogen source
Ammonium chloride (N)
-0.1
+0.0
+0.3
+0.6
-1.1
nitrogen source
L-Threonine (N)
-0.0
-0.0
-0.0
-0.7
+0.7
stress
perchlorate 25 mM
+0.1
+0.4
+0.3
-0.6
-0.2
stress
Cisplatin 0.005 mg/ml
+0.4
+0.4
-0.1
-0.1
-0.5
phage
phage 93.2
+0.1
-0.4
+0.2
+0.6
-0.3
lb
LB
-0.2
-0.1
-0.1
-0.3
+0.9
stress
nitrate 45 mM
-0.2
-0.5
-0.1
+0.4
+0.7
carbon source
succinate (C)
+0.2
+0.4
+0.2
+0.3
-0.7
stress
nitrite 10 mM
+0.3
-0.2
+0.3
+0.4
-0.5
motility
inner cut, R2A soft agar motility assay
-0.0
+0.2
+0.6
+0.2
-0.5
stress
Cisplatin 0.0025 mg/ml
+0.5
+0.5
+0.1
-1.1
+0.4
stress
nitrate 100 mM
-0.2
+0.1
-0.2
-0.2
+1.0
stress
Bacitracin 0.008 mg/ml
+0.1
+0.5
-0.6
+0.6
+0.4
stress
Cobalt chloride 0.4 mM
+0.3
-0.1
-0.0
+1.2
-0.4
stress
Phosphomycin 0.02 mg/ml
+0.4
+0.7
-0.1
+0.4
-0.0
motility
inner cut, R2A soft agar motility assay
-0.2
+0.2
+0.5
+1.1
+1.0
stress
D-Cycloserine 0.05 mg/ml
-0.0
+1.1
+1.2
-0.2
+1.4
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