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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3735 and Ac3H11_3736 are separated by 25 nucleotides
Ac3H11_3736 and Ac3H11_3737 are separated by 70 nucleotides
Ac3H11_3737 and Ac3H11_3738 overlap by 4 nucleotides
Ac3H11_3738 and Ac3H11_3739 overlap by 4 nucleotides
Ac3H11_3735 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 93,978 to 94,775
_3735
Ac3H11_3736 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 94,801 to 95,868
_3736
Ac3H11_3737 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 95,939 to 96,649
_3737
Ac3H11_3738 - FIG00641944: hypothetical protein, at 96,646 to 97,923
_3738
Ac3H11_3739 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 97,920 to 98,831
_3739
Group
Condition
Ac3H11
_3735
Ac3H11
_3736
Ac3H11
_3737
Ac3H11
_3738
Ac3H11
_3739
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.0
-0.1
-0.5
-0.4
stress
nitrate 45 mM
-0.1
+0.0
-0.2
-0.5
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
-0.1
+0.1
-0.3
stress
Bacitracin 0.032 mg/ml
-0.2
+0.1
-0.3
-0.4
-0.0
stress
Cobalt chloride 0.32 mM
+0.1
+0.0
-0.3
-0.2
-0.3
nitrogen source
L-Leucine (N)
-0.1
-0.1
+0.1
-0.1
-0.4
lb
LB
-0.4
+0.2
-0.5
+0.1
+0.1
phage
phage 93.1
-0.1
-0.0
-0.4
+0.3
-0.2
carbon source
D-Galactose (C)
+0.2
-0.1
+0.3
-0.6
-0.2
carbon source
D-Gluconic Acid (C)
-0.0
-0.2
+0.2
-0.5
+0.0
stress
Nickel (II) chloride 0.6 mM
+0.2
-0.3
-0.2
+0.2
-0.1
lb
LB
+0.1
+0.1
-0.2
+0.3
-0.5
stress
copper (II) chloride 2 mM
+0.1
-0.2
+0.4
-0.3
+0.0
stress
Aluminum chloride 2 mM
-0.0
+0.1
+0.1
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
-0.2
-0.0
-0.2
+0.4
+0.1
motility
inner cut, R2A soft agar motility assay
-0.1
-0.4
-0.0
+0.3
+0.3
stress
perchlorate 10 mM
-0.4
+0.1
-0.1
+0.2
+0.3
stress
Bacitracin 0.008 mg/ml
+0.0
+0.1
+0.1
+0.5
-0.6
pH
LB, pH10
+0.2
+0.2
-0.3
+0.4
-0.3
stress
nitrite 10 mM
+0.1
-0.1
+0.3
-0.2
+0.3
stress
perchlorate 25 mM
-0.1
-0.2
+0.1
+0.4
+0.3
stress
Zinc 1 mM
+0.0
+0.0
-0.1
+0.7
-0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.1
-0.2
+0.4
+0.3
motility
inner cut, R2A soft agar motility assay
+0.2
+0.2
-0.2
+0.2
+0.5
motility
inner cut, R2A soft agar motility assay
+0.2
-0.1
-0.0
+0.2
+0.6
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.1
+0.5
+0.1
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.1
+0.0
+0.4
+0.7
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.1
-0.0
+0.5
+0.5
+0.1
stress
Cisplatin 0.005 mg/ml
+0.2
+0.1
+0.4
+0.4
-0.1
stress
D-Cycloserine 0.05 mg/ml
+1.1
-0.1
-0.0
+1.1
+1.2
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