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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3732 and Ac3H11_3733 are separated by 51 nucleotides
Ac3H11_3733 and Ac3H11_3734 are separated by 390 nucleotides
Ac3H11_3734 and Ac3H11_3735 are separated by 30 nucleotides
Ac3H11_3735 and Ac3H11_3736 are separated by 25 nucleotides
Ac3H11_3732 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 91,260 to 91,934
_3732
Ac3H11_3733 - cytidine/deoxycytidylate deaminase family protein, at 91,986 to 92,561
_3733
Ac3H11_3734 - Oxidoreductase, at 92,952 to 93,947
_3734
Ac3H11_3735 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 93,978 to 94,775
_3735
Ac3H11_3736 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 94,801 to 95,868
_3736
Group
Condition
Ac3H11
_3732
Ac3H11
_3733
Ac3H11
_3734
Ac3H11
_3735
Ac3H11
_3736
nitrogen source
Ammonium chloride (N)
+0.3
-0.9
-0.3
-0.0
+0.1
stress
Sisomicin 0.001 mg/ml
+0.1
-0.2
-0.6
+0.1
-0.0
nitrogen source
L-tyrosine (N)
-0.7
-0.1
+0.0
+0.2
+0.0
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
-0.2
-0.2
-0.0
phage
phage 93.1
+0.0
-0.4
+0.1
-0.1
-0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-0.0
-0.1
-0.1
-0.4
nitrogen source
L-Arginine (N)
-0.4
-0.4
+0.2
+0.2
+0.1
pH
LB, pH10
-0.1
-0.5
-0.1
+0.2
+0.2
lb
LB
-0.1
+0.2
-0.2
-0.4
+0.2
stress
D-Cycloserine 0.05 mg/ml
-0.7
-0.2
-0.2
+1.1
-0.1
phage
phage 93.2
-0.2
+0.5
-0.3
-0.1
-0.1
carbon source
pyruvate (C)
+0.3
-0.1
+0.0
-0.2
-0.1
stress
copper (II) chloride 2 mM
-0.4
+0.5
-0.0
+0.1
-0.2
stress
Cisplatin 0.005 mg/ml
+0.2
+0.2
-0.7
+0.2
+0.1
lb
LB
+0.3
-0.2
+0.5
-0.1
-0.4
carbon source
D-Galactose (C)
-0.2
+0.2
-0.1
+0.2
-0.1
stress
Phosphomycin 0.02 mg/ml
-0.3
+0.5
+0.0
-0.1
+0.0
pH
LB, pH10
+0.2
-0.7
+0.4
+0.2
+0.1
stress
Cisplatin 0.0025 mg/ml
+0.0
+0.6
-0.2
-0.1
-0.0
carbon source
propionate (C)
-0.1
+0.5
-0.1
+0.0
-0.1
stress
Nickel (II) chloride 0.6 mM
-0.2
+0.4
+0.1
+0.2
-0.3
motility
inner cut, R2A soft agar motility assay
-0.0
-0.2
+0.5
+0.2
-0.1
lb
LB
+0.1
+0.3
+0.3
-0.0
-0.3
nitrogen source
D-Alanine (N)
+0.3
-0.1
-0.4
+0.5
+0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.5
+0.1
+0.1
-0.1
phage
phage 93.1
+0.3
-0.0
+0.3
-0.1
-0.0
stress
Chlorite 0.1 mM
+0.1
+0.3
+0.2
-0.2
+0.2
stress
Zinc 1 mM
+0.3
+0.3
-0.1
+0.0
+0.0
motility
inner cut, R2A soft agar motility assay
-0.2
+0.2
+0.2
+0.2
+0.2
stress
nitrite 10 mM
+0.1
+0.3
+0.3
+0.1
-0.1
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