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Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_3726 and Ac3H11_3727 are separated by 86 nucleotides
Ac3H11_3727 and Ac3H11_3728 are separated by 29 nucleotides
Ac3H11_3728 and Ac3H11_3729 overlap by 4 nucleotides
Ac3H11_3729 and Ac3H11_3730 are separated by 23 nucleotides
Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361
_3726
Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311
_3727
Ac3H11_3728 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 88,341 to 88,805
_3728
Ac3H11_3729 - Cytosine deaminase (EC 3.5.4.1), at 88,802 to 90,130
_3729
Ac3H11_3730 - Glutathione-regulated potassium-efflux system ancillary protein KefG, at 90,154 to 90,741
_3730
Group
Condition
Ac3H11
_3726
Ac3H11
_3727
Ac3H11
_3728
Ac3H11
_3729
Ac3H11
_3730
nitrogen source
L-Alanine (N)
-0.1
-1.0
-0.6
-3.6
+0.1
pH
LB, pH10
+0.1
-1.0
-0.6
-2.4
-0.1
lb
LB
-0.3
-1.0
-0.7
+0.1
-0.9
phage
phage 93.2
-0.2
+0.2
-0.2
-2.1
-0.3
stress
Bacitracin 0.008 mg/ml
-0.4
-0.2
-0.3
-1.7
+0.2
nitrogen source
L-Glutamine (N)
-0.2
-0.1
-0.6
-1.2
-0.3
lb
LB
+0.2
-0.1
-0.4
-2.0
-0.1
nitrogen source
L-Isoleucine (N)
-0.1
-0.0
-0.2
-1.6
-0.4
stress
Nickel (II) chloride 0.6 mM
-0.0
-0.4
-0.1
-1.4
-0.2
stress
copper (II) chloride 1 mM
+0.1
-0.4
-0.2
-1.6
+0.1
carbon source
D-Galactose (C)
+0.3
-0.1
-0.3
-1.7
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.2
-0.2
-0.1
-1.7
-0.0
nitrogen source
D-Alanine (N)
+0.5
-0.5
-0.7
-0.6
-0.3
nitrogen source
Ammonium chloride (N)
-0.1
-0.2
-1.1
+0.3
+0.2
nitrogen source
Uridine (N)
+0.0
-0.6
-0.4
+0.5
-0.4
stress
Cisplatin 0.005 mg/ml
+0.0
+0.2
+0.4
-0.8
-0.7
carbon source
D-Glucose (C)
-0.1
+0.4
+0.4
-1.4
-0.0
phage
phage 93.1
+0.2
-0.1
-0.0
-1.0
+0.6
motility
inner cut, R2A soft agar motility assay
+0.3
-0.8
-0.8
+0.7
+0.4
carbon source
a-Ketoglutaric (C)
-0.2
+0.3
+0.6
-0.4
-0.3
stress
Chlorite 0.1 mM
+0.2
-0.8
-0.7
+1.5
-0.1
lb
LB
-0.1
+0.5
-0.5
+0.5
-0.3
stress
nitrite 10 mM
-0.4
+0.2
+0.2
+0.7
-0.4
nitrogen source
L-Arginine (N)
+0.4
+0.3
-0.7
+0.5
+0.1
carbon source
succinate (C)
-0.1
+0.1
+0.0
+1.2
-0.3
pH
LB, pH10
+0.2
-0.3
+0.3
+1.2
+0.1
motility
inner cut, R2A soft agar motility assay
+0.9
+0.4
+0.3
-0.2
+0.3
stress
nitrate 100 mM
+0.4
-0.0
-0.4
+1.9
-0.2
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
+0.5
+0.2
+1.1
+0.1
lb
LB
+0.2
-0.0
+0.0
+1.5
+0.4
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