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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3723 and Ac3H11_3724 are separated by 102 nucleotides
Ac3H11_3724 and Ac3H11_3725 overlap by 4 nucleotides
Ac3H11_3725 and Ac3H11_3726 are separated by 193 nucleotides
Ac3H11_3726 and Ac3H11_3727 are separated by 86 nucleotides
Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307
_3723
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Ac3H11_3725 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 85,327 to 86,169
_3725
Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361
_3726
Ac3H11_3727 - Creatinine amidohydrolase (EC 3.5.2.10), at 87,448 to 88,311
_3727
Group
Condition
Ac3H11
_3723
Ac3H11
_3724
Ac3H11
_3725
Ac3H11
_3726
Ac3H11
_3727
lb
LB
-0.1
+0.2
N.D.
-0.3
-1.0
stress
Bacitracin 0.008 mg/ml
-0.0
-0.4
N.D.
-0.4
-0.2
pH
LB, pH10
+0.2
-0.2
N.D.
+0.1
-1.0
phage
phage 93.2
-0.1
-0.6
N.D.
-0.2
+0.2
motility
inner cut, R2A soft agar motility assay
+0.3
-0.4
N.D.
+0.3
-0.8
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.9
N.D.
+0.3
-0.4
nitrogen source
D-Alanine (N)
+0.1
-0.7
N.D.
+0.5
-0.5
stress
A22 0.025 mg/ml
-0.2
-0.6
N.D.
+0.4
-0.2
stress
sodium fluoride 20 mM
+0.3
-0.4
N.D.
-0.0
-0.4
motility
inner cut, R2A soft agar motility assay
+0.2
-0.7
N.D.
+0.2
-0.1
nitrogen source
L-Alanine (N)
-0.0
+0.7
N.D.
-0.1
-1.0
stress
nitrate 100 mM
-0.1
-0.5
N.D.
+0.4
-0.0
stress
Tetracycline 0.0001 mg/ml
-0.2
+0.2
N.D.
+0.2
-0.4
pH
LB, pH10
-0.3
+0.3
N.D.
+0.2
-0.3
stress
Nickel (II) chloride 0.8 mM
+0.2
+0.5
N.D.
-0.4
-0.2
stress
Chlorite 0.1 mM
+0.0
+0.7
N.D.
+0.2
-0.8
stress
Doxycycline hyclate 0.000025 mg/ml
-0.1
-0.4
N.D.
+0.1
+0.5
stress
nitrite 10 mM
+0.0
+0.5
N.D.
-0.4
+0.2
stress
Cephalothin 0.01 mg/ml
+0.1
-0.3
N.D.
+0.4
+0.3
nitrogen source
Ammonium chloride (N)
+0.0
+0.7
N.D.
-0.1
-0.2
lb
LB
+0.2
-0.2
N.D.
-0.1
+0.5
stress
Bacitracin 0.016 mg/ml
+0.3
-0.3
N.D.
+0.2
+0.3
carbon source
D-Galactose (C)
-0.2
+0.6
N.D.
+0.3
-0.1
stress
Cobalt chloride 0.4 mM
+0.2
+0.3
N.D.
+0.4
-0.2
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.6
N.D.
+0.2
-0.2
motility
inner cut, R2A soft agar motility assay
+0.1
-0.6
N.D.
+0.9
+0.4
carbon source
a-Ketoglutaric (C)
+0.2
+0.4
N.D.
-0.2
+0.3
stress
Sisomicin 0.001 mg/ml
+0.3
+0.3
N.D.
+0.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.3
+0.3
N.D.
+0.4
+0.3
stress
copper (II) chloride 2 mM
+0.2
+0.5
N.D.
+0.6
+0.2
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