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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3720 and Ac3H11_3721 are separated by 583 nucleotides
Ac3H11_3721 and Ac3H11_3722 are separated by 59 nucleotides
Ac3H11_3722 and Ac3H11_3723 are separated by 243 nucleotides
Ac3H11_3723 and Ac3H11_3724 are separated by 102 nucleotides
Ac3H11_3720 - Uncharacterized PLP-dependent aminotransferase YfdZ, at 79,778 to 81,004
_3720
Ac3H11_3721 - hypothetical protein, at 81,588 to 81,779
_3721
Ac3H11_3722 - Urease accessory protein UreD, at 81,839 to 82,675
_3722
Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307
_3723
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Group
Condition
Ac3H11
_3720
Ac3H11
_3721
Ac3H11
_3722
Ac3H11
_3723
Ac3H11
_3724
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.1
-2.0
-0.1
+0.1
pH
LB, pH10
+0.0
+0.2
-2.3
+0.2
-0.2
stress
D-Cycloserine 0.05 mg/ml
-0.7
-0.3
-0.5
+0.4
-0.9
phage
phage 93.2
-0.1
-0.5
-0.1
-0.1
-0.6
nitrogen source
L-Arginine (N)
-0.2
+0.2
-1.4
-0.0
+0.2
carbon source
D-Lactate (C)
+0.0
-0.1
-0.9
-0.2
+0.3
pH
LB, pH10
-0.0
-0.1
-0.7
-0.3
+0.3
nitrogen source
L-Histidine (N)
+0.1
+0.2
-1.1
+0.0
-0.1
motility
inner cut, R2A soft agar motility assay
-0.4
+0.2
+0.1
+0.1
-0.6
stress
Ceftazidime 0.01 mg/ml
+0.1
+0.1
-0.9
-0.1
+0.1
nitrogen source
Uridine (N)
+0.1
+0.2
-0.8
+0.1
-0.2
stress
Cisplatin 0.005 mg/ml
+0.1
+0.2
-0.8
-0.5
+0.3
stress
Zinc 1 mM
+0.0
-0.0
-0.9
+0.1
+0.3
lb
LB
-0.2
+0.3
-0.7
+0.2
-0.2
nitrogen source
L-Isoleucine (N)
+0.0
+0.1
-0.8
-0.2
+0.4
nitrogen source
D-Alanine (N)
-0.3
-0.3
+0.8
+0.1
-0.7
motility
inner cut, R2A soft agar motility assay
+0.2
+0.1
-0.6
+0.3
-0.4
carbon source
pyruvate (C)
+0.0
-0.0
-1.0
-0.0
+0.6
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
-0.6
+0.2
+0.4
stress
nitrate 100 mM
+0.2
-0.2
+0.5
-0.1
-0.5
nitrogen source
Ammonium chloride (N)
+0.3
+0.1
-1.2
+0.0
+0.7
motility
inner cut, R2A soft agar motility assay
+0.0
-0.1
+0.8
+0.2
-0.7
nitrogen source
L-Threonine (N)
-0.1
+0.3
+0.2
-0.4
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.0
-0.6
-0.0
+0.5
stress
nitrite 10 mM
+0.2
+0.3
-0.6
+0.0
+0.5
carbon source
D-Ribose (C)
+0.0
+0.2
-0.4
+0.0
+0.6
lb
LB
+0.2
+0.2
-0.5
+0.3
+0.3
stress
copper (II) chloride 2 mM
+0.2
+0.2
-0.6
+0.2
+0.5
stress
nitrate 45 mM
+0.2
+0.1
+0.8
-0.1
-0.4
stress
Cisplatin 0.0025 mg/ml
+0.0
-0.4
+0.8
+0.1
+0.6
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