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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_369 and Ac3H11_370 overlap by 4 nucleotides
Ac3H11_370 and Ac3H11_371 are separated by 44 nucleotides
Ac3H11_371 and Ac3H11_372 are separated by 78 nucleotides
Ac3H11_372 and Ac3H11_373 are separated by 118 nucleotides
Ac3H11_369 - CAIB/BAIF family protein, at 43,410 to 44,720
_369
Ac3H11_370 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 44,717 to 45,697
_370
Ac3H11_371 - Tricarboxylate transport protein TctC, at 45,742 to 46,722
_371
Ac3H11_372 - putative exported protein, at 46,801 to 47,781
_372
Ac3H11_373 - Excinuclease ABC subunit C, at 47,900 to 49,921
_373
Group
Condition
Ac3H11
_369
Ac3H11
_370
Ac3H11
_371
Ac3H11
_372
Ac3H11
_373
carbon source
propionate (C)
+0.1
-0.6
-0.3
+0.0
-5.3
stress
Sisomicin 0.001 mg/ml
+0.1
-0.9
-0.7
+0.0
-3.2
carbon source
D-Ribose (C)
+0.0
+0.2
-0.1
+0.0
-4.8
stress
Chlorite 0.1 mM
+0.0
+0.1
+0.0
-0.1
-4.4
nitrogen source
L-Threonine (N)
-0.2
-2.5
-0.4
+0.1
-1.3
carbon source
D-Ribose (C)
-0.2
+0.2
+0.1
+0.1
-4.0
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.7
-0.1
+0.1
-3.0
stress
Nickel (II) chloride 0.6 mM
-0.1
-0.5
-0.0
+0.0
-3.0
stress
copper (II) chloride 1 mM
+0.1
-0.7
-0.0
+0.0
-2.8
lb
LB
+0.1
+0.6
+0.3
+0.1
-4.6
stress
nitrite 10 mM
+0.0
-0.5
-0.0
-0.0
-2.9
stress
perchlorate 10 mM
-0.2
-0.1
-0.4
-0.1
-2.5
stress
Bacitracin 0.016 mg/ml
+0.2
+0.1
+0.0
-0.1
-3.4
carbon source
L-Arabinose (C)
+0.1
-1.4
-0.1
+0.1
-1.6
stress
Zinc 1 mM
+0.0
+0.4
+0.2
-0.0
-3.4
nitrogen source
Ammonium chloride (N)
+0.1
-1.3
-0.7
+0.4
-1.2
stress
Cisplatin 0.005 mg/ml
+0.3
+1.5
-0.8
-0.4
-3.4
carbon source
L-Lactate (C)
+0.1
-2.0
+0.1
+0.2
-1.2
stress
perchlorate 25 mM
-0.1
+0.6
-0.4
+0.2
-2.7
nitrogen source
L-Alanine (N)
+0.6
-4.0
-1.0
+0.3
+1.7
nitrogen source
Uridine (N)
-0.1
+0.5
-0.4
-0.1
-2.3
stress
Fusidic 0.001 mg/ml
+0.1
+0.4
-0.2
-0.3
-2.2
stress
A22 0.025 mg/ml
+0.0
+1.0
+0.2
-0.2
-3.1
stress
Phosphomycin 0.02 mg/ml
+0.0
+1.0
+0.1
+0.3
-3.3
stress
2-Furfuraldehyde 0.06 vol%
+0.1
+1.9
-0.2
+0.1
-3.4
motility
inner cut, R2A soft agar motility assay
+0.1
-0.3
+0.9
+0.2
-2.1
lb
LB
-0.1
+0.9
+0.0
+0.3
-2.0
stress
Cisplatin 0.0025 mg/ml
-0.3
+1.2
+0.4
+0.2
-2.0
stress
Cobalt chloride 0.4 mM
-0.1
+2.8
-0.1
-0.2
-2.0
motility
inner cut, R2A soft agar motility assay
+0.0
+3.1
+0.1
+0.3
-0.1
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