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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3696 and Ac3H11_3697 are separated by 193 nucleotides
Ac3H11_3697 and Ac3H11_3698 are separated by 75 nucleotides
Ac3H11_3698 and Ac3H11_3699 are separated by 9 nucleotides
Ac3H11_3699 and Ac3H11_3700 are separated by 20 nucleotides
Ac3H11_3696 - FIG01198930: hypothetical protein, at 54,291 to 54,977
_3696
Ac3H11_3697 - Conservative hypothetical protein probably involved in hydantoin, pyrimidine utilization # coupled to 3.5.2.14 or similar function, at 55,171 to 56,355
_3697
Ac3H11_3698 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 56,431 to 57,483
_3698
Ac3H11_3699 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 57,493 to 57,957
_3699
Ac3H11_3700 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 57,978 to 60,230
_3700
Group
Condition
Ac3H11
_3696
Ac3H11
_3697
Ac3H11
_3698
Ac3H11
_3699
Ac3H11
_3700
motility
inner cut, R2A soft agar motility assay
+0.1
-0.1
+0.2
-3.6
+0.2
stress
Phosphomycin 0.06 mg/ml
-0.4
-0.1
-0.2
-1.6
-0.3
pH
LB, pH10
-0.7
-0.5
-0.4
-0.7
-0.1
stress
D-Cycloserine 0.05 mg/ml
+0.1
-0.2
+0.4
-1.8
-0.3
stress
Bacitracin 0.008 mg/ml
-0.3
-0.0
-0.1
-1.1
-0.1
stress
Cisplatin 0.005 mg/ml
+0.3
-0.6
-0.3
-1.2
+0.2
stress
perchlorate 10 mM
-0.3
-0.1
+0.2
-1.2
-0.1
lb
LB
-0.1
-0.3
+0.1
-0.8
-0.2
stress
sodium fluoride 20 mM
-0.0
+0.2
-0.0
-0.9
-0.4
stress
5-Hydroxymethylfurfural 5 mM
-0.1
+0.0
+0.1
-1.0
-0.1
nitrogen source
L-Alanine (N)
+0.1
-0.7
+0.4
-0.4
-0.5
stress
Cobalt chloride 0.16 mM
-0.7
+0.3
+0.5
-1.0
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.3
+0.1
-0.3
-0.8
+0.4
stress
perchlorate 25 mM
-0.2
-0.3
+0.0
-0.5
+0.3
stress
Bacitracin 0.016 mg/ml
+0.1
-0.4
+0.3
-0.9
+0.2
stress
sodium fluoride 35 mM
+0.2
+0.2
-0.4
-0.7
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.6
-0.2
+0.5
-0.2
-0.3
stress
Nickel (II) chloride 0.6 mM
-0.6
-0.1
+0.5
-0.2
+0.0
pH
LB, pH10
+0.2
-0.3
-0.2
-0.4
+0.3
stress
Cobalt chloride 0.32 mM
-0.7
-0.1
+0.6
+0.1
-0.2
lb
LB
-0.6
-0.1
+0.5
+0.2
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.4
-0.1
-0.4
+1.3
-0.4
nitrogen source
L-Arginine (N)
+0.0
+0.5
+0.8
-1.1
+0.1
stress
Sisomicin 0.001 mg/ml
-0.3
-0.3
+0.5
+0.3
+0.2
nitrogen source
L-Histidine (N)
-0.3
+0.2
+0.3
-0.2
+0.5
stress
syringaldehyde 2.5 mM
-0.2
+0.1
+0.2
+0.8
-0.1
nitrogen source
Ammonium chloride (N)
-0.0
-0.3
+0.1
+1.1
+0.3
carbon source
D-Galactose (C)
-0.0
-0.1
+0.0
+1.7
-0.2
stress
Cobalt chloride 0.4 mM
-0.1
+0.4
+0.6
+0.4
+0.1
nitrogen source
D-Alanine (N)
-0.0
+0.3
+0.2
+0.9
+0.2
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