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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3691 and Ac3H11_3692 are separated by 4 nucleotides
Ac3H11_3692 and Ac3H11_3693 are separated by 36 nucleotides
Ac3H11_3693 and Ac3H11_3694 are separated by 123 nucleotides
Ac3H11_3694 and Ac3H11_3695 overlap by 4 nucleotides
Ac3H11_3691 - hypothetical protein, at 48,193 to 48,396
_3691
Ac3H11_3692 - HupE-UreJ family metal transporter, at 48,401 to 49,015
_3692
Ac3H11_3693 - Urease gamma subunit (EC 3.5.1.5), at 49,052 to 49,354
_3693
Ac3H11_3694 - Two-component hybrid sensor and regulator, at 49,478 to 53,113
_3694
Ac3H11_3695 - Two-component response regulator, at 53,110 to 54,198
_3695
Group
Condition
Ac3H11
_3691
Ac3H11
_3692
Ac3H11
_3693
Ac3H11
_3694
Ac3H11
_3695
stress
Sisomicin 0.001 mg/ml
N.D.
-1.4
-4.3
+0.1
-0.3
nitrogen source
L-Arginine (N)
N.D.
-3.0
-0.7
-0.7
-1.0
stress
Chlorite 0.1 mM
N.D.
-0.0
-4.3
-0.0
-0.3
stress
nitrate 100 mM
N.D.
-1.8
-1.9
+0.0
-0.2
lb
LB
N.D.
-0.1
-3.0
-0.0
+0.0
stress
perchlorate 10 mM
N.D.
-1.9
-1.3
-0.0
+0.1
carbon source
L-Lactate (C)
N.D.
-1.1
-2.3
+0.1
+0.2
carbon source
a-Ketoglutaric (C)
N.D.
+0.5
-2.7
-0.2
-0.2
pH
LB, pH10
N.D.
-0.7
-1.7
+0.0
-0.1
stress
Sisomicin 0.0005 mg/ml
N.D.
-2.1
-0.2
-0.1
+0.0
stress
perchlorate 25 mM
N.D.
-0.7
-1.7
-0.0
+0.3
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.5
-1.8
-0.3
+0.7
carbon source
L-Lactate (C)
N.D.
-2.6
+0.8
+0.0
-0.1
stress
nitrate 20 mM
N.D.
-1.2
-0.8
+0.1
-0.1
nitrogen source
L-Alanine (N)
N.D.
-2.5
+0.4
+0.2
+0.3
stress
nitrite 10 mM
N.D.
+0.4
-1.3
-0.1
-0.4
stress
Cisplatin 0.005 mg/ml
N.D.
-2.3
+0.7
+0.1
+0.8
carbon source
D-Fructose (C)
N.D.
-1.1
+0.9
+0.1
-0.1
motility
inner cut, R2A soft agar motility assay
N.D.
+1.2
-1.1
+0.0
-0.2
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-1.1
+0.9
+0.1
+0.4
carbon source
propionate (C)
N.D.
-0.9
+1.2
-0.0
+0.1
motility
inner cut, R2A soft agar motility assay
N.D.
+1.0
+0.4
-0.1
-0.8
stress
nitrite 10 mM
N.D.
+0.5
+0.8
-0.2
-0.6
stress
syringaldehyde 2.5 mM
N.D.
+0.3
+1.4
-0.1
-0.4
motility
inner cut, R2A soft agar motility assay
N.D.
-0.4
+2.2
+0.0
-0.3
carbon source
pyruvate (C)
N.D.
+0.3
+1.6
-0.1
-0.1
carbon source
succinate (C)
N.D.
+1.0
+1.1
-0.0
-0.1
stress
Cobalt chloride 0.32 mM
N.D.
+1.0
+1.0
-0.2
+0.1
carbon source
succinate (C)
N.D.
-1.5
+3.7
-0.1
-0.1
stress
D-Cycloserine 0.05 mg/ml
N.D.
+1.5
+0.9
+0.1
+0.0
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