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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3685 and Ac3H11_3686 overlap by 4 nucleotides
Ac3H11_3686 and Ac3H11_3687 are separated by 119 nucleotides
Ac3H11_3687 and Ac3H11_3688 are separated by 64 nucleotides
Ac3H11_3688 and Ac3H11_3689 are separated by 7 nucleotides
Ac3H11_3685 - Urease accessory protein UreG, at 43,393 to 44,076
_3685
Ac3H11_3686 - Urease accessory protein UreF, at 44,073 to 44,783
_3686
Ac3H11_3687 - Urease accessory protein UreE, at 44,903 to 45,553
_3687
Ac3H11_3688 - Histone acetyltransferase HPA2, at 45,618 to 46,106
_3688
Ac3H11_3689 - Urease alpha subunit (EC 3.5.1.5), at 46,114 to 47,832
_3689
Group
Condition
Ac3H11
_3685
Ac3H11
_3686
Ac3H11
_3687
Ac3H11
_3688
Ac3H11
_3689
nitrogen source
L-Arginine (N)
-2.0
-2.2
-2.0
-0.6
-1.9
stress
Cisplatin 0.005 mg/ml
+0.3
-1.0
-3.2
+0.1
-0.9
nitrogen source
D-Alanine (N)
+0.0
-1.0
-3.5
-0.1
+0.3
motility
inner cut, R2A soft agar motility assay
-0.3
-1.6
-1.8
+0.3
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.3
-0.1
-2.0
-0.1
-1.1
stress
copper (II) chloride 2 mM
-0.2
-1.1
-2.1
+0.4
+0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.0
-0.6
-2.4
+0.2
+0.2
nitrogen source
L-Alanine (N)
+0.7
+0.4
-3.5
+0.1
-0.1
nitrogen source
Ammonium chloride (N)
-0.3
-0.2
-2.3
+0.0
+0.8
stress
Bacitracin 0.032 mg/ml
+0.2
+0.6
-2.3
+0.0
-0.1
stress
Cobalt chloride 0.32 mM
-0.0
-0.2
-1.8
+0.1
+0.2
temperature
LB 30C
+0.1
+0.1
-1.5
-0.1
-0.2
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.4
-1.7
+0.1
-0.5
stress
Fusidic 0.001 mg/ml
-0.3
-0.3
-1.2
+0.2
+0.2
stress
A22 0.025 mg/ml
-0.2
-0.0
-1.8
+0.4
+0.2
stress
nitrite 10 mM
+0.1
-0.5
-1.2
+0.2
-0.0
pH
LB, pH9
+0.0
+0.2
-1.7
+0.1
+0.1
pH
LB, pH10
+0.5
+0.8
-2.2
-0.0
-0.3
nitrogen source
L-Threonine (N)
-0.0
+0.6
-1.0
-0.1
-0.6
carbon source
D-Lactate (C)
+0.2
+0.4
-1.0
-0.1
-0.5
stress
Doxycycline hyclate 0.000025 mg/ml
+0.2
-0.4
-1.2
-0.1
+0.5
stress
Chlorate 20 mM
+0.1
-0.2
-1.0
+0.1
+0.6
pH
LB, pH7
+0.1
+0.7
-0.7
-0.3
-0.1
carbon source
L-Lactate (C)
+0.4
+0.2
-0.8
-0.3
+0.4
pH
LB, pH10
-0.1
+1.0
-0.8
+0.2
+0.1
stress
copper (II) chloride 1 mM
-0.1
-0.3
+1.1
+0.1
-0.4
stress
copper (II) chloride 1 mM
-0.1
+0.4
+1.2
+0.0
-0.3
stress
Bacitracin 0.016 mg/ml
-0.3
+0.6
+1.3
-0.2
+0.1
nitrogen source
L-Leucine (N)
+0.3
-0.1
+1.4
-0.1
+0.2
stress
nitrite 10 mM
+0.1
+0.1
+2.0
+0.1
+0.1
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