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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3673 and Ac3H11_3674 are separated by 120 nucleotides
Ac3H11_3674 and Ac3H11_3675 overlap by 33 nucleotides
Ac3H11_3675 and Ac3H11_3676 are separated by 320 nucleotides
Ac3H11_3676 and Ac3H11_3742 are separated by 2821 nucleotides
Ac3H11_3673 - putative exported protein, at 22,032 to 22,358
_3673
Ac3H11_3674 - hypothetical protein, at 22,479 to 22,673
_3674
Ac3H11_3675 - diguanylate cyclase with PAS/PAC sensor, at 22,641 to 24,377
_3675
Ac3H11_3676 - hypothetical protein, at 24,698 to 24,886
_3676
Ac3H11_3742 - tRNA-Ser-TGA, at 27,708 to 27,792
_3742
Group
Condition
Ac3H11
_3673
Ac3H11
_3674
Ac3H11
_3675
Ac3H11
_3676
Ac3H11
_3742
stress
Cisplatin 0.005 mg/ml
-4.1
+0.6
-0.0
+0.1
N.D.
pH
LB, pH10
-3.1
+0.2
-0.2
+0.1
N.D.
carbon source
D-Lactate (C)
-0.9
-0.5
+0.0
-0.0
N.D.
stress
Sisomicin 0.001 mg/ml
-1.2
+0.0
-0.1
-0.1
N.D.
carbon source
L-Lactate (C)
-0.8
-0.2
-0.1
-0.2
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-1.6
+0.1
+0.0
+0.3
N.D.
stress
perchlorate 25 mM
-1.6
+0.2
+0.0
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.2
-0.6
-0.1
-0.3
N.D.
phage
phage 93.1
-1.4
-0.2
+0.2
+0.2
N.D.
carbon source
D,L-Lactate (C)
-0.8
-0.1
-0.1
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.7
-0.6
+0.1
+0.2
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.8
-0.5
+0.2
+0.2
N.D.
pH
LB, pH5
-0.7
-0.2
+0.0
+0.1
N.D.
stress
copper (II) chloride 1 mM
-0.9
+0.1
+0.1
+0.2
N.D.
carbon source
L-Malic (C)
-0.7
+0.3
-0.1
+0.0
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.3
-0.2
-0.2
+0.3
N.D.
phage
phage 93.1
-0.4
+0.4
+0.0
-0.2
N.D.
stress
5-Hydroxymethylfurfural 5 mM
-0.5
+0.4
-0.0
+0.1
N.D.
carbon source
succinate (C)
+0.5
-0.4
-0.1
+0.1
N.D.
pH
LB, pH8
+0.8
-0.2
+0.0
-0.2
N.D.
lb
LB
+0.7
-0.2
+0.0
+0.1
N.D.
stress
Cobalt chloride 0.32 mM
+0.7
-0.0
-0.1
+0.2
N.D.
lb
LB
+0.6
-0.1
+0.0
+0.3
N.D.
nitrogen source
L-tyrosine (N)
+0.9
+0.1
-0.0
-0.1
N.D.
carbon source
pyruvate (C)
+1.0
+0.0
-0.1
+0.0
N.D.
stress
Sisomicin 0.004 mg/ml
+0.5
+0.5
+0.0
-0.0
N.D.
stress
Bacitracin 0.008 mg/ml
+0.9
+0.3
-0.1
+0.1
N.D.
nitrogen source
L-Threonine (N)
+0.8
+0.2
+0.1
+0.1
N.D.
lb
LB
+0.9
+0.3
+0.1
+0.1
N.D.
stress
Chlorite 0.1 mM
+1.4
+0.2
+0.0
-0.1
N.D.
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Ac3H11_3675
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