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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3670 and Ac3H11_3671 are separated by 49 nucleotides
Ac3H11_3671 and Ac3H11_3672 overlap by 17 nucleotides
Ac3H11_3672 and Ac3H11_3673 are separated by 139 nucleotides
Ac3H11_3673 and Ac3H11_3674 are separated by 120 nucleotides
Ac3H11_3670 - Ribonuclease PH (EC 2.7.7.56), at 19,242 to 19,976
_3670
Ac3H11_3671 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 20,026 to 20,625
_3671
Ac3H11_3672 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 20,609 to 21,892
_3672
Ac3H11_3673 - putative exported protein, at 22,032 to 22,358
_3673
Ac3H11_3674 - hypothetical protein, at 22,479 to 22,673
_3674
Group
Condition
Ac3H11
_3670
Ac3H11
_3671
Ac3H11
_3672
Ac3H11
_3673
Ac3H11
_3674
stress
Cisplatin 0.005 mg/ml
-0.2
-0.2
-0.0
-4.1
+0.6
pH
LB, pH10
+0.4
-0.1
-0.2
-3.1
+0.2
stress
perchlorate 25 mM
-0.3
+0.0
-1.1
-1.6
+0.2
motility
inner cut, R2A soft agar motility assay
-0.4
-0.3
-0.5
-0.7
-0.6
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.5
-0.1
-1.6
+0.1
stress
Cobalt chloride 0.32 mM
-0.1
-0.5
-1.6
-0.2
+0.1
carbon source
Tween 20 (C)
+0.1
-0.1
-1.3
-0.7
+0.2
stress
Sisomicin 0.001 mg/ml
-0.2
-0.2
-0.2
-1.2
+0.0
stress
perchlorate 10 mM
-0.5
+0.3
-1.6
+0.1
-0.1
carbon source
D-Lactate (C)
+0.0
-0.1
-0.2
-0.9
-0.5
stress
copper (II) chloride 1 mM
-0.1
-0.2
-0.2
-0.9
+0.1
stress
D-Cycloserine 0.05 mg/ml
-0.1
+0.0
+0.1
-0.8
-0.5
stress
Cobalt chloride 0.4 mM
-0.0
-0.3
-1.0
+0.3
-0.2
phage
phage 93.1
+0.4
+0.1
+0.2
-1.4
-0.2
stress
5-Hydroxymethylfurfural 5 mM
-0.2
+0.0
-0.6
-0.5
+0.4
carbon source
L-Malic (C)
-0.2
-0.1
-0.2
-0.7
+0.3
motility
inner cut, R2A soft agar motility assay
+0.0
-0.4
-0.5
+0.4
-0.3
stress
Cobalt chloride 0.32 mM
+0.0
-0.1
-1.0
+0.1
+0.3
stress
Cobalt chloride 0.32 mM
-0.3
-0.1
-0.8
+0.7
-0.0
nitrogen source
Uridine (N)
-0.1
-0.1
-0.7
+0.7
-0.2
stress
Chloramphenicol 0.0005 mg/ml
-0.1
-0.2
-0.6
+0.5
+0.2
pH
LB, pH5
-0.0
+0.2
+0.7
-0.7
-0.2
nitrogen source
L-Leucine (N)
+0.3
+0.3
-0.6
+0.2
-0.3
phage
phage 93.1
+0.3
-0.2
+0.0
-0.4
+0.4
lb
LB
-0.3
+0.4
-0.3
+0.4
+0.2
nitrogen source
L-Threonine (N)
+0.1
-0.1
-0.5
+0.8
+0.2
stress
Bacitracin 0.008 mg/ml
-0.1
-0.2
-0.2
+0.9
+0.3
lb
LB
+0.1
-0.4
-0.1
+0.9
+0.3
stress
Chlorite 0.1 mM
-0.3
-0.0
-0.4
+1.4
+0.2
pH
LB, pH10
+0.9
-0.2
-0.1
+0.4
+0.2
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