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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3609 and Ac3H11_3610 are separated by 90 nucleotides
Ac3H11_3610 and Ac3H11_3611 overlap by 4 nucleotides
Ac3H11_3611 and Ac3H11_3612 are separated by 10 nucleotides
Ac3H11_3612 and Ac3H11_3613 overlap by 4 nucleotides
Ac3H11_3609 - Transcriptional regulator, IclR family, at 161,777 to 162,529
_3609
Ac3H11_3610 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 162,620 to 163,465
_3610
Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796
_3611
Ac3H11_3612 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 164,807 to 165,742
_3612
Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749
_3613
Group
Condition
Ac3H11
_3609
Ac3H11
_3610
Ac3H11
_3611
Ac3H11
_3612
Ac3H11
_3613
nitrogen source
Ammonium chloride (N)
-0.1
-1.5
+0.0
+0.1
-0.7
nitrogen source
L-Alanine (N)
-0.5
-0.5
-0.7
-0.3
+0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.1
+0.1
-0.2
-0.9
pH
LB, pH10
+0.0
-0.8
+0.3
-0.4
-0.2
nitrogen source
Uridine (N)
+0.2
-0.5
+0.0
-0.2
-0.6
stress
sodium fluoride 50 mM
+0.2
+0.2
+0.0
+0.4
-1.9
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.8
-0.1
-0.2
+0.2
stress
A22 0.025 mg/ml
-0.0
-0.2
+0.3
+0.1
-1.0
stress
sodium fluoride 20 mM
-0.2
-0.5
+0.1
+0.3
-0.4
stress
sodium fluoride 25 mM
-0.1
-0.5
-0.0
-0.3
+0.6
stress
Bacitracin 0.008 mg/ml
-0.2
-0.5
+0.0
+0.6
-0.2
carbon source
succinate (C)
-0.2
+0.6
-0.1
+0.4
-0.6
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
-0.2
+0.3
+0.6
stress
Phosphomycin 0.06 mg/ml
+0.1
-0.4
+0.0
-0.1
+0.8
motility
inner cut, R2A soft agar motility assay
-0.4
+0.9
+0.1
-0.1
-0.1
stress
Cobalt chloride 0.4 mM
-0.0
+0.6
+0.1
+0.9
-1.0
carbon source
D-Lactate (C)
+0.7
-0.3
+0.2
+0.3
-0.3
stress
Cisplatin 0.005 mg/ml
-1.2
-0.1
+0.2
+0.3
+1.4
stress
Paraquat dichloride 0.01 mg/ml
-0.1
-0.8
+0.3
+0.4
+0.7
carbon source
D-Galactose (C)
-0.1
-0.3
-0.1
+0.3
+0.9
carbon source
D-Glucose (C)
+0.0
-0.2
+0.2
+0.2
+0.7
stress
perchlorate 25 mM
-0.2
+0.9
+0.2
+0.3
-0.1
stress
copper (II) chloride 2 mM
-0.1
+0.7
+0.0
+0.7
-0.1
stress
copper (II) chloride 1 mM
-0.3
+0.0
-0.1
+0.3
+1.4
lb
LB
+0.3
+0.5
+0.0
+0.1
+0.7
carbon source
pyruvate (C)
-0.0
+0.1
+0.3
+0.5
+0.7
carbon source
D-Galactose (C)
+0.3
+0.3
+0.1
+0.2
+0.7
carbon source
D-Gluconic Acid (C)
+0.4
+0.2
+0.2
-0.3
+1.3
motility
inner cut, R2A soft agar motility assay
+0.2
+0.8
+0.3
+0.3
+0.6
stress
nitrite 10 mM
+0.2
+0.8
+0.3
+0.7
+0.4
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