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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3603 and Ac3H11_3604 are separated by 68 nucleotides
Ac3H11_3604 and Ac3H11_3605 are separated by 348 nucleotides
Ac3H11_3605 and Ac3H11_3606 are separated by 152 nucleotides
Ac3H11_3606 and Ac3H11_3607 overlap by 23 nucleotides
Ac3H11_3603 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 155,674 to 156,474
_3603
Ac3H11_3604 - Probable sensor histidine kinase protein (EC 2.7.3.-), at 156,543 to 159,020
_3604
Ac3H11_3605 - FIG00349159: hypothetical protein, at 159,369 to 159,539
_3605
Ac3H11_3606 - Mlr1171 protein, at 159,692 to 160,294
_3606
Ac3H11_3607 - Metallo-beta-lactamase superfamily protein, at 160,272 to 161,240
_3607
Group
Condition
Ac3H11
_3603
Ac3H11
_3604
Ac3H11
_3605
Ac3H11
_3606
Ac3H11
_3607
nitrogen source
L-Alanine (N)
-0.1
-0.1
-0.4
-6.7
+0.4
stress
Cobalt chloride 0.4 mM
+0.2
+0.1
-0.2
-1.1
+0.0
stress
syringaldehyde 2.5 mM
+0.1
-0.1
-1.1
+0.1
+0.1
stress
Cisplatin 0.005 mg/ml
+0.1
+0.1
+0.4
-0.6
-0.5
stress
Sisomicin 0.001 mg/ml
+0.1
+0.1
+0.6
-0.9
-0.3
lb
LB
+0.1
+0.0
+0.9
-1.4
+0.1
stress
Paraquat dichloride 0.01 mg/ml
+0.2
+0.1
+0.7
-0.5
-0.7
nitrogen source
Ammonium chloride (N)
-0.2
+0.1
-0.6
+0.1
+0.6
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.1
+0.3
-0.7
-0.1
stress
Zinc 1 mM
+0.2
-0.1
+0.6
+0.1
-0.6
stress
Chlorite 0.1 mM
+0.2
+0.1
+0.7
-0.6
-0.3
stress
Fusidic 0.001 mg/ml
+0.1
-0.0
+0.7
-0.4
-0.3
pH
LB, pH10
+0.2
+0.2
-0.5
+0.6
-0.3
carbon source
D-Lactate (C)
+0.2
+0.2
-0.8
+0.5
+0.3
pH
LB, pH6
-0.1
+0.1
+1.2
-0.5
-0.1
carbon source
L-Malic (C)
+0.1
+0.0
+0.9
-0.0
-0.4
lb
LB
+0.2
+0.0
+0.6
-0.6
+0.5
carbon source
D-Galactose (C)
+0.3
+0.1
-0.4
+0.5
+0.2
pH
LB, pH9
+0.1
+0.0
+0.5
-0.4
+0.5
nitrogen source
L-Phenylalanine (N)
+0.0
-0.2
+0.9
-0.1
+0.3
lb
LB
-0.3
+0.0
+0.0
+0.3
+0.8
stress
Tetracycline 0.00005 mg/ml
+0.0
+0.0
+0.9
+0.4
-0.1
nitrogen source
L-Histidine (N)
+0.4
+0.2
+0.3
+0.5
-0.1
carbon source
D-Gluconic Acid (C)
+0.0
+0.1
-0.1
+1.2
+0.1
nitrogen source
L-Leucine (N)
+0.0
-0.3
+1.1
+0.3
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.0
+0.8
+0.4
+0.1
nitrogen source
D-Alanine (N)
-0.1
-0.1
+1.3
+0.2
+0.5
carbon source
pyruvate (C)
+0.0
+0.3
-0.0
+1.4
+0.3
phage
phage 93.2
+0.2
+0.2
+0.7
+1.4
-0.4
carbon source
pyruvate (C)
+0.1
+0.2
+0.8
+0.5
+0.4
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