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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3586 and Ac3H11_3587 are separated by 39 nucleotides
Ac3H11_3587 and Ac3H11_3588 are separated by 27 nucleotides
Ac3H11_3588 and Ac3H11_3589 overlap by 4 nucleotides
Ac3H11_3589 and Ac3H11_3590 are separated by 178 nucleotides
Ac3H11_3586 - Transcriptional regulator, MerR family, at 139,915 to 140,358
_3586
Ac3H11_3587 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 140,398 to 141,192
_3587
Ac3H11_3588 - hypothetical protein, at 141,220 to 141,336
_3588
Ac3H11_3589 - FIG00538094: hypothetical protein, at 141,333 to 142,502
_3589
Ac3H11_3590 - Carbon monoxide dehydrogenase small chain (EC 1.2.99.2), at 142,681 to 143,151
_3590
Group
Condition
Ac3H11
_3586
Ac3H11
_3587
Ac3H11
_3588
Ac3H11
_3589
Ac3H11
_3590
nitrogen source
L-Alanine (N)
-0.5
-4.8
-5.3
+0.8
+0.6
carbon source
D-Gluconic Acid (C)
+0.1
-5.1
-3.0
+0.8
-1.6
lb
LB
-1.2
+0.1
-0.7
-4.5
-0.6
stress
Zinc 1 mM
+0.1
-0.9
-0.5
-4.6
-0.8
nitrogen source
D-Alanine (N)
+0.4
-0.0
+0.5
-4.8
-1.6
pH
LB, pH10
+0.9
+0.4
-2.1
-1.4
-2.4
stress
Paraquat dichloride 0.01 mg/ml
+0.4
-1.9
-1.6
-0.1
-1.1
stress
nitrate 100 mM
+0.5
+0.0
+1.3
-1.2
-4.5
nitrogen source
Ammonium chloride (N)
-0.3
-2.4
+2.3
-2.2
-1.0
stress
Cobalt chloride 0.16 mM
+0.1
-2.1
-0.4
+0.0
-1.2
carbon source
a-Ketoglutaric (C)
-1.0
-1.4
-0.4
-0.9
+0.5
lb
LB
-0.4
-1.4
+0.1
-2.0
+0.7
stress
Chlorite 0.1 mM
+1.3
+0.4
+0.1
-4.5
-0.2
motility
inner cut, R2A soft agar motility assay
+1.0
+0.7
+0.4
-2.9
-2.0
nitrogen source
L-Leucine (N)
+0.0
+0.9
-1.4
-0.4
-1.8
motility
inner cut, R2A soft agar motility assay
+0.0
-0.2
+0.8
-1.1
-2.1
stress
Cisplatin 0.005 mg/ml
+0.8
+1.6
-0.2
-4.6
+0.1
motility
inner cut, R2A soft agar motility assay
-1.4
-0.4
+1.0
-1.4
-0.0
lb
LB
-0.4
-2.7
+0.7
+0.2
+0.3
carbon source
L-Arabinose (C)
+0.5
+0.1
-0.8
+0.4
-2.0
carbon source
propionate (C)
+0.3
-1.7
+0.8
+0.2
-0.7
carbon source
D-Glucose (C)
+0.6
-0.7
+0.6
-1.5
+0.7
pH
LB, pH10
+2.1
+0.5
-0.1
-1.0
-1.8
stress
Sisomicin 0.001 mg/ml
+0.1
-0.0
-2.0
+0.9
+0.7
stress
Cisplatin 0.0025 mg/ml
-0.2
+1.0
+0.8
-1.7
-0.1
stress
Cobalt chloride 0.4 mM
+0.7
+0.8
+1.0
-0.4
-2.2
stress
Cobalt chloride 0.32 mM
+0.6
-1.2
+1.5
+0.8
-0.3
stress
Phosphomycin 0.06 mg/ml
+0.0
+0.5
+0.7
-1.2
+1.4
carbon source
L-Lactate (C)
+0.5
-1.1
+0.9
+0.1
+1.0
nitrogen source
L-Isoleucine (N)
-0.5
+1.0
+0.6
+2.0
-1.1
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