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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3581 and Ac3H11_3582 are separated by 108 nucleotides
Ac3H11_3582 and Ac3H11_3583 are separated by 79 nucleotides
Ac3H11_3583 and Ac3H11_3584 overlap by 4 nucleotides
Ac3H11_3584 and Ac3H11_3585 are separated by 59 nucleotides
Ac3H11_3581 - Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1), at 135,424 to 136,248
_3581
Ac3H11_3582 - diguanylate cyclase (GGDEF domain), at 136,357 to 138,327
_3582
Ac3H11_3583 - hypothetical protein, at 138,407 to 138,655
_3583
Ac3H11_3584 - putative flavodoxin, at 138,652 to 139,251
_3584
Ac3H11_3585 - Permeases of the major facilitator superfamily, at 139,311 to 139,877
_3585
Group
Condition
Ac3H11
_3581
Ac3H11
_3582
Ac3H11
_3583
Ac3H11
_3584
Ac3H11
_3585
stress
Paraquat dichloride 0.01 mg/ml
+0.1
-0.7
-1.5
-0.1
-1.9
carbon source
succinate (C)
-0.1
-0.1
+0.8
-0.3
-3.7
carbon source
succinate (C)
-0.3
+0.1
-2.0
-0.1
-1.1
stress
nitrate 100 mM
+0.3
-0.1
-1.7
-0.3
-0.4
carbon source
D-Galactose (C)
+0.2
-0.3
-0.7
+0.4
-1.6
carbon source
D-Lactate (C)
+0.2
-0.0
-0.2
+0.0
-2.0
stress
nitrate 20 mM
+0.1
+0.1
-0.1
+0.5
-2.5
carbon source
a-Ketoglutaric (C)
-0.3
+0.3
+0.2
-0.2
-1.8
stress
Cisplatin 0.0025 mg/ml
-0.5
+0.1
-0.6
+0.3
-1.0
carbon source
propionate (C)
+0.3
-0.1
+0.2
-0.3
-1.8
stress
D-Cycloserine 0.05 mg/ml
-0.0
+0.1
-1.9
+0.4
-0.1
phage
phage 93.2
-0.3
+0.8
-0.6
-0.4
-1.0
stress
Cobalt chloride 0.16 mM
-0.4
+0.0
+0.6
+0.3
-2.0
motility
inner cut, R2A soft agar motility assay
+0.3
+0.4
-0.8
-0.8
-0.7
nitrogen source
L-Threonine (N)
+0.7
+0.1
+0.0
-0.3
-1.8
stress
Sisomicin 0.004 mg/ml
+0.3
+0.3
-0.4
-0.1
-1.5
nitrogen source
L-Histidine (N)
+0.4
+0.5
+0.5
-0.0
-2.0
motility
inner cut, R2A soft agar motility assay
+0.6
+0.2
+0.7
-0.4
-1.4
stress
nitrite 10 mM
+0.6
+0.2
+0.3
-0.1
-1.4
nitrogen source
L-Alanine (N)
+0.4
+0.1
-0.7
+0.7
-0.8
motility
inner cut, R2A soft agar motility assay
-0.1
-0.3
+0.4
-0.9
+0.8
stress
Chlorate 20 mM
+1.4
+0.2
-1.1
+0.1
-0.5
pH
LB, pH10
+0.8
-0.2
-2.1
+0.2
+1.6
stress
perchlorate 10 mM
+0.4
+0.0
+1.0
-0.3
-0.9
pH
LB, pH10
+0.6
-0.5
-1.3
+0.5
+1.2
lb
LB
-0.3
+0.2
-0.4
-0.4
+2.5
stress
Cisplatin 0.005 mg/ml
+0.6
-0.2
-0.7
-0.2
+2.5
stress
Bacitracin 0.032 mg/ml
-0.1
+0.0
+1.5
+0.6
+0.6
nitrogen source
Ammonium chloride (N)
+0.6
+0.6
+0.4
+0.1
+1.9
phage
phage 93.1
+0.4
+0.4
+0.2
+0.2
+2.7
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