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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3531 and Ac3H11_3532 are separated by 136 nucleotides
Ac3H11_3532 and Ac3H11_3533 are separated by 247 nucleotides
Ac3H11_3533 and Ac3H11_3534 overlap by 9 nucleotides
Ac3H11_3534 and Ac3H11_3535 are separated by 27 nucleotides
Ac3H11_3531 - Ankyrin, at 77,434 to 77,694
_3531
Ac3H11_3532 - L-carnitine dehydratase/bile acid-inducible protein F, at 77,831 to 79,105
_3532
Ac3H11_3533 - Glutaryl-CoA dehydrogenase (EC 1.3.99.7), at 79,353 to 80,549
_3533
Ac3H11_3534 - hypothetical protein, at 80,541 to 80,702
_3534
Ac3H11_3535 - Glycine cleavage system transcriptional activator, at 80,730 to 81,674
_3535
Group
Condition
Ac3H11
_3531
Ac3H11
_3532
Ac3H11
_3533
Ac3H11
_3534
Ac3H11
_3535
nitrogen source
Ammonium chloride (N)
N.D.
-0.1
+0.1
-2.9
+0.0
motility
inner cut, R2A soft agar motility assay
N.D.
+0.0
-0.2
-0.9
+0.0
nitrogen source
L-Leucine (N)
N.D.
-0.1
-0.1
-0.7
-0.1
phage
phage 93.1
N.D.
-0.2
-0.2
-0.2
-0.3
stress
Sisomicin 0.001 mg/ml
N.D.
-0.3
+0.3
-1.0
+0.1
pH
LB, pH5
N.D.
+0.1
-0.0
-0.7
+0.0
stress
Chlorite 0.1 mM
N.D.
-0.0
+0.3
-1.0
+0.2
stress
Nickel (II) chloride 0.8 mM
N.D.
+0.2
-0.3
-0.4
+0.0
stress
copper (II) chloride 2 mM
N.D.
+0.3
+0.3
-0.8
-0.3
carbon source
D-Lactate (C)
N.D.
+0.3
-0.3
-0.5
+0.0
stress
Phosphomycin 0.02 mg/ml
N.D.
+0.0
+0.2
-0.7
-0.1
carbon source
D-Lactate (C)
N.D.
+0.1
-0.0
-0.7
+0.2
nitrogen source
D-Alanine (N)
N.D.
+0.2
+0.3
-0.9
+0.2
lb
LB
N.D.
+0.0
+0.4
-0.8
+0.1
stress
copper (II) chloride 1 mM
N.D.
+0.3
+0.4
-0.7
-0.1
stress
perchlorate 25 mM
N.D.
+0.2
+0.4
-0.5
-0.1
nitrogen source
L-Threonine (N)
N.D.
+0.2
+0.3
-0.6
+0.1
stress
nitrate 45 mM
N.D.
+0.3
-0.5
+0.1
+0.1
stress
sodium fluoride 25 mM
N.D.
+0.2
+0.3
-0.5
+0.1
lb
LB
N.D.
+0.3
+0.4
-0.4
+0.1
pH
LB, pH10
N.D.
+0.6
+0.4
-0.4
+0.1
stress
2-Furfuraldehyde 0.06 vol%
N.D.
+0.1
-0.2
+0.7
+0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.3
-0.2
+0.4
+0.5
stress
Nickel (II) chloride 0.6 mM
N.D.
-0.0
+0.3
+0.4
+0.2
stress
Bacitracin 0.032 mg/ml
N.D.
+0.1
+0.2
+0.5
+0.2
stress
Fusidic 0.001 mg/ml
N.D.
+0.1
-0.1
+0.6
+0.4
stress
perchlorate 10 mM
N.D.
+0.3
+0.4
+0.5
+0.0
stress
Cephalothin 0.005 mg/ml
N.D.
+0.0
+0.8
+0.2
+0.1
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-0.1
+0.1
+1.5
+0.0
pH
LB, pH10
N.D.
+0.4
+0.5
+0.1
+0.6
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