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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3525 and Ac3H11_3526 overlap by 36 nucleotides
Ac3H11_3526 and Ac3H11_3527 are separated by 115 nucleotides
Ac3H11_3527 and Ac3H11_3528 are separated by 541 nucleotides
Ac3H11_3528 and Ac3H11_3529 are separated by 115 nucleotides
Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421
_3525
Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324
_3526
Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925
_3527
Ac3H11_3528 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 73,467 to 74,030
_3528
Ac3H11_3529 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,146 to 75,741
_3529
Group
Condition
Ac3H11
_3525
Ac3H11
_3526
Ac3H11
_3527
Ac3H11
_3528
Ac3H11
_3529
nitrogen source
L-Alanine (N)
-3.8
+0.1
N.D.
-1.1
-0.6
stress
Cisplatin 0.005 mg/ml
-4.0
+0.3
N.D.
-0.2
-1.2
phage
phage 93.2
-3.7
+0.1
N.D.
+0.1
-0.7
pH
LB, pH10
-3.7
+0.3
N.D.
-0.2
-0.3
stress
Paraquat dichloride 0.01 mg/ml
+0.6
+0.0
N.D.
-0.3
-3.7
carbon source
succinate (C)
-1.2
-0.1
N.D.
-0.7
-1.3
stress
copper (II) chloride 2 mM
+0.2
-0.2
N.D.
+0.5
-3.5
pH
LB, pH5
-0.1
-0.1
N.D.
-0.0
-2.5
nitrogen source
L-Serine (N)
-1.8
-0.0
N.D.
+0.3
-1.2
stress
Chlorite 0.1 mM
-0.7
-0.2
N.D.
-0.1
-1.5
motility
inner cut, R2A soft agar motility assay
-2.0
-0.7
N.D.
+0.0
+0.1
carbon source
D-Ribose (C)
-2.8
-0.2
N.D.
-0.1
+0.8
phage
phage 93.1
-2.1
+0.1
N.D.
-0.5
+0.1
stress
Phosphomycin 0.02 mg/ml
-2.6
+0.2
N.D.
+0.3
-0.0
stress
sodium fluoride 50 mM
-1.5
+0.3
N.D.
-0.1
-0.8
carbon source
a-Ketoglutaric (C)
+0.0
+0.3
N.D.
-0.3
-2.0
nitrogen source
D-Alanine (N)
+0.7
-0.4
N.D.
-0.1
-2.1
stress
nitrate 100 mM
+0.3
+0.2
N.D.
-0.3
-2.1
stress
Cobalt chloride 0.4 mM
-0.6
+0.4
N.D.
-0.0
-1.4
lb
LB
+0.5
+0.1
N.D.
+0.1
-2.0
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.1
N.D.
+0.7
-2.3
carbon source
a-Ketoglutaric (C)
+0.8
+0.1
N.D.
-0.3
-1.8
nitrogen source
L-Isoleucine (N)
-1.7
-0.1
N.D.
+0.3
+0.7
nitrogen source
Ammonium chloride (N)
-2.2
-0.0
N.D.
+0.7
+0.7
stress
perchlorate 10 mM
+1.4
-0.2
N.D.
+0.2
-2.2
stress
Aluminum chloride 4 mM
+1.1
-0.1
N.D.
-0.2
-1.1
stress
Nickel (II) chloride 0.6 mM
-1.5
+0.1
N.D.
+0.2
+1.2
motility
inner cut, R2A soft agar motility assay
+1.4
-0.3
N.D.
-0.2
-0.7
stress
Sisomicin 0.004 mg/ml
-0.7
+0.3
N.D.
-0.4
+1.4
stress
Bacitracin 0.032 mg/ml
+1.5
-0.0
N.D.
+0.3
-0.8
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