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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3523 and Ac3H11_3524 are separated by 192 nucleotides
Ac3H11_3524 and Ac3H11_3525 are separated by 96 nucleotides
Ac3H11_3525 and Ac3H11_3526 overlap by 36 nucleotides
Ac3H11_3526 and Ac3H11_3527 are separated by 115 nucleotides
Ac3H11_3523 - Xylonate dehydratase (EC 4.2.1.82), at 68,212 to 69,993
_3523
Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193
_3524
Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421
_3525
Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324
_3526
Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925
_3527
Group
Condition
Ac3H11
_3523
Ac3H11
_3524
Ac3H11
_3525
Ac3H11
_3526
Ac3H11
_3527
stress
Cisplatin 0.005 mg/ml
-0.5
-0.2
-4.0
+0.3
N.D.
phage
phage 93.2
+0.1
-0.2
-3.7
+0.1
N.D.
pH
LB, pH10
-0.0
-0.0
-3.7
+0.3
N.D.
nitrogen source
L-Alanine (N)
+0.6
+0.1
-3.8
+0.1
N.D.
carbon source
D-Ribose (C)
+0.3
-0.3
-2.8
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+0.3
-0.2
-2.0
-0.7
N.D.
stress
Phosphomycin 0.02 mg/ml
-0.3
+0.1
-2.6
+0.2
N.D.
nitrogen source
Ammonium chloride (N)
+0.0
+0.2
-2.2
-0.0
N.D.
nitrogen source
L-Isoleucine (N)
-0.4
+0.3
-1.7
-0.1
N.D.
nitrogen source
L-Serine (N)
-0.1
+0.2
-1.8
-0.0
N.D.
phage
phage 93.1
+0.4
-0.2
-2.1
+0.1
N.D.
lb
LB
+0.1
-0.0
-1.5
-0.0
N.D.
carbon source
pyruvate (C)
+0.1
-0.1
-1.7
+0.2
N.D.
carbon source
succinate (C)
+0.0
-0.2
-1.2
-0.1
N.D.
carbon source
D-Gluconic Acid (C)
-0.0
+0.0
-1.7
+0.2
N.D.
stress
sodium fluoride 50 mM
-0.0
-0.2
-1.5
+0.3
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.0
-1.5
+0.1
N.D.
motility
inner cut, R2A soft agar motility assay
+0.3
-0.2
-0.7
-0.4
N.D.
carbon source
D-Galactose (C)
+0.0
+0.4
-1.2
-0.0
N.D.
pH
LB, pH5
-0.1
-0.2
+1.1
-0.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
-0.1
+1.4
-0.3
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.2
+1.1
+0.2
N.D.
pH
LB, pH10
+0.4
-0.2
+1.0
-0.0
N.D.
pH
LB, pH9
-0.1
+0.1
+1.4
-0.1
N.D.
stress
Bacitracin 0.032 mg/ml
-0.1
+0.1
+1.5
-0.0
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.3
+1.3
-0.0
N.D.
carbon source
D-Glucose (C)
+0.3
+0.0
+1.1
+0.2
N.D.
stress
Nickel (II) chloride 0.6 mM
+0.0
+0.2
+1.0
+0.4
N.D.
stress
perchlorate 25 mM
+0.2
+0.3
+1.2
+0.2
N.D.
stress
perchlorate 10 mM
+0.3
+0.3
+1.4
-0.2
N.D.
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