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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3516 and Ac3H11_3517 are separated by 265 nucleotides
Ac3H11_3517 and Ac3H11_3518 are separated by 110 nucleotides
Ac3H11_3518 and Ac3H11_3519 overlap by 17 nucleotides
Ac3H11_3519 and Ac3H11_3520 overlap by 16 nucleotides
Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725
_3516
Ac3H11_3517 - Transcriptional regulator, LysR family, at 62,991 to 63,893
_3517
Ac3H11_3518 - Rrf2-linked NADH-flavin reductase, at 64,004 to 64,645
_3518
Ac3H11_3519 - hypothetical protein, at 64,629 to 64,796
_3519
Ac3H11_3520 - TRAP-type C4-dicarboxylate transport system, large permease component, at 64,781 to 66,061
_3520
Group
Condition
Ac3H11
_3516
Ac3H11
_3517
Ac3H11
_3518
Ac3H11
_3519
Ac3H11
_3520
carbon source
a-Ketoglutaric (C)
-1.1
-0.5
-0.3
-0.5
-2.1
carbon source
a-Ketoglutaric (C)
-0.4
-0.3
-0.5
-0.4
-1.8
stress
A22 0.025 mg/ml
-0.1
-0.6
-1.2
-0.3
-0.3
carbon source
D-Gluconic Acid (C)
-0.2
-0.2
-0.3
-0.5
-1.2
carbon source
D-Galactose (C)
+0.1
-0.5
-0.2
-0.5
-1.3
stress
sodium fluoride 25 mM
+0.0
-1.6
+0.1
+0.3
-1.1
carbon source
L-Lactate (C)
+0.2
-1.1
-0.4
-0.4
-0.5
motility
inner cut, R2A soft agar motility assay
+0.0
-1.6
-0.8
+0.0
+0.6
nitrogen source
L-Leucine (N)
-0.2
-0.5
-0.5
-0.8
+0.3
lb
LB
+0.3
-0.9
-2.1
+0.6
+0.5
stress
copper (II) chloride 2 mM
+0.3
-0.7
-2.1
+0.2
+0.9
lb
LB
+0.4
+0.2
-0.4
-0.5
-0.9
stress
Cobalt chloride 0.32 mM
+0.7
-0.5
-0.6
-0.0
-0.4
phage
phage 93.1
+0.0
-0.3
-1.2
-0.1
+0.6
stress
perchlorate 10 mM
+0.8
-0.5
-0.0
-0.7
+0.4
nitrogen source
L-Alanine (N)
-0.2
-1.0
+0.6
+0.2
+0.4
pH
LB, pH10
-0.2
+0.1
+1.4
-0.6
-0.2
nitrogen source
Ammonium chloride (N)
-0.2
+0.7
+0.9
+0.0
-0.7
nitrogen source
D-Alanine (N)
-1.1
-0.4
+0.7
+0.8
+1.0
stress
Cephalothin 0.01 mg/ml
+0.1
+0.7
+0.2
+0.7
-0.6
carbon source
D-Ribose (C)
+0.5
+0.6
+0.7
-0.2
-0.4
stress
Cisplatin 0.005 mg/ml
+0.6
+0.5
-1.2
+0.9
+0.8
stress
Chlorite 0.1 mM
+0.7
+0.2
-0.6
+0.9
+0.7
stress
Ceftazidime 0.01 mg/ml
-0.0
+0.6
+0.4
+1.1
-0.1
carbon source
L-Malic (C)
+0.3
+0.4
+0.4
+0.2
+0.7
stress
Sisomicin 0.001 mg/ml
+0.9
-0.2
-0.3
+0.9
+1.0
stress
Paraquat dichloride 0.01 mg/ml
+0.1
+0.5
+0.4
+1.1
+0.3
phage
phage 93.2
+0.3
+0.2
+1.8
-0.2
+0.3
stress
D-Cycloserine 0.05 mg/ml
+0.4
+0.6
+1.5
-0.6
+0.9
motility
inner cut, R2A soft agar motility assay
+0.3
+0.8
+0.8
+1.5
+1.0
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