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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3514 and Ac3H11_3515 are separated by 44 nucleotides
Ac3H11_3515 and Ac3H11_3516 are separated by 28 nucleotides
Ac3H11_3516 and Ac3H11_3517 are separated by 265 nucleotides
Ac3H11_3517 and Ac3H11_3518 are separated by 110 nucleotides
Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369
_3514
Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292
_3515
Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725
_3516
Ac3H11_3517 - Transcriptional regulator, LysR family, at 62,991 to 63,893
_3517
Ac3H11_3518 - Rrf2-linked NADH-flavin reductase, at 64,004 to 64,645
_3518
Group
Condition
Ac3H11
_3514
Ac3H11
_3515
Ac3H11
_3516
Ac3H11
_3517
Ac3H11
_3518
lb
LB
-0.0
-0.2
+0.3
-0.9
-2.1
stress
copper (II) chloride 2 mM
-0.1
-0.0
+0.3
-0.7
-2.1
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
-1.1
-0.5
-0.3
stress
A22 0.025 mg/ml
+0.1
-0.0
-0.1
-0.6
-1.2
motility
inner cut, R2A soft agar motility assay
+0.1
+0.5
+0.0
-1.6
-0.8
stress
Cisplatin 0.0025 mg/ml
-0.1
-1.4
+0.1
-0.0
-0.3
phage
phage 93.1
+0.1
-0.3
+0.0
-0.3
-1.2
carbon source
L-Lactate (C)
-0.1
+0.0
+0.2
-1.1
-0.4
carbon source
D-Lactate (C)
-0.1
-0.6
-0.4
+0.2
-0.4
stress
sodium fluoride 25 mM
-0.0
+0.4
+0.0
-1.6
+0.1
nitrogen source
D-Alanine (N)
-0.0
-0.1
-1.1
-0.4
+0.7
nitrogen source
L-Alanine (N)
+0.0
-0.3
-0.2
-1.0
+0.6
nitrogen source
L-Leucine (N)
+0.0
+0.4
-0.2
-0.5
-0.5
carbon source
a-Ketoglutaric (C)
+0.1
+0.3
-0.4
-0.3
-0.5
motility
inner cut, R2A soft agar motility assay
-0.0
+0.6
+0.3
-1.0
-0.2
stress
Cobalt chloride 0.32 mM
+0.1
+0.2
+0.7
-0.5
-0.6
stress
Chlorite 0.1 mM
-0.1
-0.0
+0.7
+0.2
-0.6
stress
Bacitracin 0.032 mg/ml
+0.2
+0.8
-0.1
-0.5
-0.2
stress
nitrate 100 mM
+0.1
-0.5
+0.5
-0.5
+0.6
stress
Paraquat dichloride 0.01 mg/ml
-0.2
-0.3
+0.1
+0.5
+0.4
stress
Sisomicin 0.001 mg/ml
+0.1
+0.1
+0.9
-0.2
-0.3
stress
Cisplatin 0.005 mg/ml
-0.1
+0.9
+0.6
+0.5
-1.2
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
+0.2
-0.4
+0.6
+0.3
pH
LB, pH10
+0.0
-0.0
-0.2
+0.1
+1.4
stress
Aluminum chloride 4 mM
-0.0
+0.3
+0.5
+0.7
+0.0
motility
inner cut, R2A soft agar motility assay
+0.2
-0.3
+0.3
+0.8
+0.8
nitrogen source
Ammonium chloride (N)
-0.1
+0.5
-0.2
+0.7
+0.9
carbon source
D-Ribose (C)
+0.0
+0.1
+0.5
+0.6
+0.7
stress
D-Cycloserine 0.05 mg/ml
-0.0
-0.4
+0.4
+0.6
+1.5
phage
phage 93.2
+0.1
+0.0
+0.3
+0.2
+1.8
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