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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3511 and Ac3H11_3512 are separated by 40 nucleotides
Ac3H11_3512 and Ac3H11_3513 are separated by 345 nucleotides
Ac3H11_3513 and Ac3H11_3514 are separated by 131 nucleotides
Ac3H11_3514 and Ac3H11_3515 are separated by 44 nucleotides
Ac3H11_3511 - FIG01198229: hypothetical protein, at 58,502 to 59,047
_3511
Ac3H11_3512 - Chromosome 3 SCAF14978, whole genome shotgun sequence, at 59,088 to 59,630
_3512
Ac3H11_3513 - Chemotaxis protein CheV (EC 2.7.3.-), at 59,976 to 60,935
_3513
Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369
_3514
Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292
_3515
Group
Condition
Ac3H11
_3511
Ac3H11
_3512
Ac3H11
_3513
Ac3H11
_3514
Ac3H11
_3515
stress
Cisplatin 0.0025 mg/ml
-0.2
+0.1
+0.0
-0.1
-1.4
carbon source
D-Gluconic Acid (C)
-0.6
-0.1
-0.4
-0.2
-0.0
carbon source
D-Lactate (C)
-0.1
-0.0
-0.6
-0.1
-0.6
carbon source
pyruvate (C)
-0.4
-0.2
-0.2
-0.2
-0.3
stress
Chlorate 20 mM
-0.8
-0.1
+0.0
-0.1
-0.2
stress
Nickel (II) chloride 0.6 mM
-0.5
-0.2
-0.7
+0.2
+0.1
carbon source
succinate (C)
-0.1
-0.2
-0.4
-0.1
-0.1
carbon source
succinate (C)
-0.2
-0.2
-0.4
-0.1
+0.0
pH
LB, pH10
-0.6
-0.1
-0.2
+0.0
-0.0
carbon source
a-Ketoglutaric (C)
-0.7
-0.2
+0.4
-0.1
-0.2
stress
nitrate 100 mM
+0.3
-0.2
-0.4
+0.1
-0.5
carbon source
D-Galactose (C)
-0.3
-0.0
-0.4
+0.1
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
-0.1
-0.5
+0.2
-0.2
stress
Tetracycline 0.0001 mg/ml
-0.2
+0.1
-0.4
+0.0
+0.2
stress
syringaldehyde 2.5 mM
-0.4
+0.1
+0.2
+0.1
-0.2
stress
Phosphomycin 0.06 mg/ml
-0.2
+0.0
-0.6
+0.2
+0.5
stress
sodium fluoride 25 mM
-0.6
+0.0
+0.1
-0.0
+0.4
stress
Paraquat dichloride 0.01 mg/ml
+0.4
+0.1
-0.1
-0.2
-0.3
stress
Sisomicin 0.0005 mg/ml
-0.3
+0.0
-0.2
+0.0
+0.4
nitrogen source
Ammonium chloride (N)
+0.0
-0.5
-0.1
-0.1
+0.5
stress
D-Cycloserine 0.05 mg/ml
+0.7
-0.1
-0.3
-0.0
-0.4
motility
inner cut, R2A soft agar motility assay
+0.3
-0.2
+0.4
+0.2
-0.3
motility
inner cut, R2A soft agar motility assay
+0.3
+0.0
-0.4
+0.1
+0.5
motility
inner cut, R2A soft agar motility assay
-0.1
+0.2
-0.2
-0.0
+0.6
stress
Fusidic 0.001 mg/ml
+0.2
+0.2
+0.3
+0.2
-0.1
stress
Sisomicin 0.001 mg/ml
+0.6
+0.2
+0.2
+0.1
+0.1
temperature
LB 23C
+0.4
+0.1
+0.3
+0.1
+0.2
stress
Bacitracin 0.032 mg/ml
-0.3
+0.2
+0.3
+0.2
+0.8
stress
perchlorate 25 mM
+0.9
+0.2
+0.1
-0.1
+0.1
stress
Cisplatin 0.005 mg/ml
+0.4
+0.0
+0.3
-0.1
+0.9
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