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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3463 and Ac3H11_3464 are separated by 768 nucleotides
Ac3H11_3464 and Ac3H11_3465 overlap by 4 nucleotides
Ac3H11_3465 and Ac3H11_3466 overlap by 1 nucleotides
Ac3H11_3466 and Ac3H11_3467 are separated by 3 nucleotides
Ac3H11_3463 - Phage integrase, at 15,158 to 16,351
_3463
Ac3H11_3464 - hypothetical protein, at 17,120 to 17,512
_3464
Ac3H11_3465 - hypothetical protein, at 17,509 to 18,021
_3465
Ac3H11_3466 - Chromosome (plasmid) partitioning protein ParB, at 18,021 to 20,156
_3466
Ac3H11_3467 - hypothetical protein, at 20,160 to 20,420
_3467
Group
Condition
Ac3H11
_3463
Ac3H11
_3464
Ac3H11
_3465
Ac3H11
_3466
Ac3H11
_3467
phage
phage 93.1
-0.3
-2.0
-0.3
+0.3
N.D.
pH
LB, pH10
-0.7
-0.7
-0.6
-0.0
N.D.
carbon source
succinate (C)
-0.3
-1.2
-0.1
-0.2
N.D.
stress
copper (II) chloride 2 mM
+0.0
-1.7
-0.1
+0.2
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
-0.6
-0.1
-0.4
N.D.
carbon source
D-Sorbitol (C)
-0.2
-1.2
+0.1
-0.1
N.D.
nitrogen source
L-Leucine (N)
-0.3
-0.7
-0.3
-0.1
N.D.
carbon source
L-Arabinose (C)
-0.2
-1.3
+0.1
-0.0
N.D.
carbon source
L-Lactate (C)
-0.1
-1.1
-0.0
-0.1
N.D.
stress
nitrate 100 mM
-0.2
-1.1
+0.0
-0.1
N.D.
nitrogen source
Uridine (N)
+0.0
-1.0
-0.2
-0.1
N.D.
lb
LB
-0.1
-1.1
-0.0
-0.1
N.D.
stress
Phosphomycin 0.06 mg/ml
+0.1
-1.3
+0.1
-0.2
N.D.
carbon source
D-Lactate (C)
-0.0
-1.7
+0.3
+0.1
N.D.
carbon source
D-Lactate (C)
-0.0
-1.4
+0.1
+0.1
N.D.
carbon source
D-Lactate (C)
-0.0
-1.0
+0.1
-0.3
N.D.
nitrogen source
D-Alanine (N)
+0.1
-0.8
-0.2
-0.2
N.D.
lb
LB
+0.2
-1.1
+0.1
-0.2
N.D.
stress
Aluminum chloride 4 mM
-0.1
-1.1
+0.2
-0.0
N.D.
phage
phage 93.1
-0.4
-1.0
+0.5
+0.0
N.D.
stress
Cisplatin 0.005 mg/ml
-0.1
-1.0
+0.0
+0.2
N.D.
stress
Chlorite 0.1 mM
+0.1
-1.0
+0.2
-0.2
N.D.
carbon source
D,L-Lactate (C)
+0.1
-1.2
+0.4
+0.0
N.D.
lb
LB
+0.2
-0.9
+0.4
-0.2
N.D.
stress
copper (II) chloride 1 mM
+0.2
-0.8
+0.3
-0.1
N.D.
pH
LB, pH10
-0.4
+0.5
-0.6
+0.1
N.D.
nitrogen source
Ammonium chloride (N)
+0.2
-0.5
+0.6
-0.5
N.D.
stress
Cobalt chloride 0.16 mM
+0.3
-0.9
+0.3
+0.2
N.D.
pH
LB, pH8
-0.1
+0.9
-0.2
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
-0.5
+0.5
+0.2
+0.3
N.D.
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