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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3441 and Ac3H11_3442 are separated by 78 nucleotides
Ac3H11_3442 and Ac3H11_3443 overlap by 4 nucleotides
Ac3H11_3443 and Ac3H11_3444 are separated by 89 nucleotides
Ac3H11_3444 and Ac3H11_3445 are separated by 303 nucleotides
Ac3H11_3441 - Enamidase (EC 3.5.2.18), at 124,129 to 125,316
_3441
Ac3H11_3442 - Outer membrane lipoprotein, at 125,395 to 126,198
_3442
Ac3H11_3443 - hypothetical protein, at 126,195 to 126,407
_3443
Ac3H11_3444 - Ribonuclease BN (EC 3.1.-.-), at 126,497 to 127,495
_3444
Ac3H11_3445 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 127,799 to 128,572
_3445
Group
Condition
Ac3H11
_3441
Ac3H11
_3442
Ac3H11
_3443
Ac3H11
_3444
Ac3H11
_3445
pH
LB, pH10
+0.1
-0.0
-0.9
+0.1
-0.6
stress
Chlorite 0.1 mM
-0.3
-0.2
+0.4
-0.0
-0.9
stress
Bacitracin 0.008 mg/ml
+0.1
-0.4
-0.1
-0.1
-0.5
stress
D-Cycloserine 0.05 mg/ml
-0.4
+0.2
+0.0
-0.3
-0.4
phage
phage 93.1
+0.1
-0.5
-0.3
+0.1
-0.3
stress
copper (II) chloride 2 mM
-0.2
-0.1
+0.1
-0.5
-0.1
lb
LB
-0.5
-0.6
+0.2
-0.0
+0.1
carbon source
L-Lactate (C)
-0.0
-0.3
-0.4
-0.3
+0.2
lb
LB
+0.1
-0.2
+0.1
-0.4
-0.4
carbon source
D,L-Lactate (C)
-0.1
-0.4
+0.0
-0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.3
-0.6
-0.1
-0.3
+0.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.4
+0.1
-0.1
-0.3
nitrogen source
L-Histidine (N)
-0.1
-0.3
-0.5
-0.0
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.5
-0.2
-0.2
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.5
-0.2
-0.2
+0.2
stress
Sisomicin 0.0005 mg/ml
+0.1
+0.4
-0.4
-0.3
-0.1
carbon source
D-Galactose (C)
-0.1
+0.2
-0.0
-0.5
+0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.4
-0.7
+0.3
-0.2
-0.1
motility
inner cut, R2A soft agar motility assay
+0.4
-0.3
-0.1
-0.3
-0.0
stress
perchlorate 10 mM
+0.3
+0.1
+0.2
-0.2
-0.5
nitrogen source
L-Leucine (N)
-0.2
-0.3
-0.2
+0.0
+0.8
carbon source
D-Glucose (C)
+0.2
-0.1
-0.2
-0.2
+0.4
stress
Cisplatin 0.005 mg/ml
-0.2
-0.1
-0.4
+0.2
+0.8
carbon source
L-Lactate (C)
+0.2
+0.1
-0.2
-0.2
+0.4
pH
LB, pH10
-0.0
-0.2
+0.4
-0.1
+0.3
phage
phage 93.1
+0.2
-0.0
+0.2
-0.4
+0.4
stress
Cobalt chloride 0.16 mM
+0.1
-0.2
+0.2
-0.3
+0.6
carbon source
D-Gluconic Acid (C)
+0.3
-0.1
+0.0
-0.1
+0.6
nitrogen source
Ammonium chloride (N)
-0.3
+0.3
+0.1
-0.2
+1.0
nitrogen source
L-Serine (N)
-0.0
+0.2
-0.2
+0.3
+0.6
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