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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3430 and Ac3H11_3431 overlap by 4 nucleotides
Ac3H11_3431 and Ac3H11_3432 overlap by 4 nucleotides
Ac3H11_3432 and Ac3H11_3433 are separated by 167 nucleotides
Ac3H11_3433 and Ac3H11_3434 are separated by 80 nucleotides
Ac3H11_3430 - ABC-type branched-chain amino acid transport systems, ATPase component, at 113,041 to 113,790
_3430
Ac3H11_3431 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 113,787 to 114,569
_3431
Ac3H11_3432 - putative permease component of branched-chain amino acid transport system, at 114,566 to 116,473
_3432
Ac3H11_3433 - branched-chain amino acid-binding protein, at 116,641 to 117,852
_3433
Ac3H11_3434 - FIG00440100: hypothetical protein, at 117,933 to 118,517
_3434
Group
Condition
Ac3H11
_3430
Ac3H11
_3431
Ac3H11
_3432
Ac3H11
_3433
Ac3H11
_3434
nitrogen source
D-Alanine (N)
-0.1
-5.0
-0.0
-0.1
-0.1
pH
LB, pH10
-0.6
-4.5
-0.1
-0.1
+0.2
nitrogen source
L-Histidine (N)
-0.6
-2.7
+0.1
+0.1
-0.3
motility
inner cut, R2A soft agar motility assay
-0.9
-2.0
+0.3
-0.0
+0.1
lb
LB
+0.1
-2.1
-0.1
+0.2
+0.0
stress
Phosphomycin 0.06 mg/ml
-0.5
-1.3
-0.2
-0.2
+0.2
nitrogen source
Uridine (N)
-0.1
-1.7
+0.2
-0.0
-0.0
carbon source
a-Ketoglutaric (C)
+0.1
-1.3
-0.0
-0.2
-0.1
carbon source
a-Ketoglutaric (C)
+0.5
-2.3
+0.0
+0.3
+0.1
stress
Bacitracin 0.032 mg/ml
-0.4
-0.3
-0.4
+0.1
-0.3
stress
nitrate 100 mM
-0.0
-1.7
-0.2
+0.2
+0.6
stress
Bacitracin 0.008 mg/ml
-0.5
-1.1
-0.0
+0.4
+0.2
stress
nitrite 10 mM
+0.2
-1.1
+0.1
-0.1
+0.1
nitrogen source
L-Alanine (N)
+0.2
-1.3
+0.1
+0.0
+0.1
stress
Chlorate 20 mM
+0.4
-1.2
-0.1
-0.1
+0.2
stress
copper (II) chloride 2 mM
-1.1
+0.8
-0.4
+0.1
+0.3
motility
inner cut, R2A soft agar motility assay
+0.9
-0.8
-0.1
-0.2
-0.0
pH
LB, pH10
-0.7
+0.1
-0.2
+0.2
+0.5
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.7
-0.6
+0.2
-0.1
stress
Cisplatin 0.0025 mg/ml
+0.2
+1.4
-0.4
+0.1
-0.5
stress
A22 0.025 mg/ml
-0.3
+0.9
+0.1
+0.0
+0.2
stress
Zinc 1 mM
-0.2
+1.1
+0.1
-0.2
+0.3
stress
copper (II) chloride 1 mM
-0.0
+0.8
-0.3
+0.1
+0.6
stress
perchlorate 25 mM
+0.1
+0.7
-0.1
+0.2
+0.4
stress
Cephalothin 0.005 mg/ml
+0.2
+1.3
-0.1
+0.1
-0.0
stress
sodium fluoride 35 mM
-0.0
+1.2
+0.1
+0.1
+0.3
nitrogen source
Ammonium chloride (N)
+0.2
+1.3
+0.2
+0.5
-0.4
motility
inner cut, R2A soft agar motility assay
+0.4
+1.9
-0.1
+0.0
+0.0
stress
perchlorate 10 mM
+0.1
+1.5
+0.2
+0.1
+0.5
stress
Cobalt chloride 0.4 mM
-0.4
+3.1
+0.0
+0.1
+0.0
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