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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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500 nt
Ac3H11_3427 and Ac3H11_3428 overlap by 4 nucleotides
Ac3H11_3428 and Ac3H11_3429 are separated by 17 nucleotides
Ac3H11_3429 and Ac3H11_3430 are separated by 144 nucleotides
Ac3H11_3430 and Ac3H11_3431 overlap by 4 nucleotides
Ac3H11_3427 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 107,487 to 111,218
_3427
Ac3H11_3428 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 111,215 to 111,721
_3428
Ac3H11_3429 - Extracellular ligand-binding receptor, at 111,739 to 112,896
_3429
Ac3H11_3430 - ABC-type branched-chain amino acid transport systems, ATPase component, at 113,041 to 113,790
_3430
Ac3H11_3431 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 113,787 to 114,569
_3431
Group
Condition
Ac3H11
_3427
Ac3H11
_3428
Ac3H11
_3429
Ac3H11
_3430
Ac3H11
_3431
pH
LB, pH10
-0.3
-0.5
-0.1
-0.6
-4.5
nitrogen source
D-Alanine (N)
-0.1
+0.8
-0.3
-0.1
-5.0
motility
inner cut, R2A soft agar motility assay
+0.2
-0.7
+0.0
-0.9
-2.0
nitrogen source
L-Histidine (N)
+0.0
+0.4
+0.0
-0.6
-2.7
stress
Phosphomycin 0.06 mg/ml
-0.0
-0.4
-0.1
-0.5
-1.3
stress
nitrate 100 mM
+0.1
-0.4
+0.1
-0.0
-1.7
carbon source
a-Ketoglutaric (C)
-0.0
+0.2
-0.1
+0.5
-2.3
nitrogen source
Uridine (N)
-0.1
+0.2
+0.1
-0.1
-1.7
lb
LB
+0.1
+0.5
-0.2
+0.1
-2.1
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.5
-0.2
-0.5
-0.5
stress
Bacitracin 0.008 mg/ml
+0.1
-0.0
+0.1
-0.5
-1.1
nitrogen source
L-Alanine (N)
-0.2
+0.2
-0.1
+0.2
-1.3
stress
copper (II) chloride 2 mM
-0.2
-0.1
-0.2
-1.1
+0.8
carbon source
a-Ketoglutaric (C)
+0.2
+0.3
+0.0
+0.1
-1.3
stress
Chlorate 20 mM
+0.0
+0.1
-0.0
+0.4
-1.2
nitrogen source
L-Threonine (N)
-0.1
-0.8
-0.3
+0.0
+0.7
stress
Chloramphenicol 0.0005 mg/ml
+0.1
+0.7
+0.1
-0.2
-0.9
stress
Bacitracin 0.032 mg/ml
+0.0
+0.8
-0.2
-0.4
-0.3
stress
D-Cycloserine 0.05 mg/ml
+0.1
-0.8
+0.4
-0.2
+0.7
lb
LB
+0.0
-0.6
+0.3
+0.1
+0.8
motility
inner cut, R2A soft agar motility assay
+0.3
+0.2
+0.2
+0.9
-0.8
stress
Zinc 1 mM
+0.1
-0.2
+0.2
-0.2
+1.1
stress
A22 0.025 mg/ml
-0.1
+0.5
-0.1
-0.3
+0.9
stress
Cisplatin 0.0025 mg/ml
+0.0
-0.7
+0.2
+0.2
+1.4
nitrogen source
Ammonium chloride (N)
-0.2
+0.1
+0.3
+0.2
+1.3
carbon source
succinate (C)
+0.3
+0.6
+0.4
-0.2
+0.5
stress
Cephalothin 0.005 mg/ml
-0.1
+0.1
+0.2
+0.2
+1.3
stress
perchlorate 10 mM
-0.0
+0.5
+0.0
+0.1
+1.5
stress
Cobalt chloride 0.4 mM
+0.1
-0.2
-0.2
-0.4
+3.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.0
+0.4
+0.4
+1.9
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