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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3403 and Ac3H11_3404 are separated by 225 nucleotides
Ac3H11_3404 and Ac3H11_3405 are separated by 157 nucleotides
Ac3H11_3405 and Ac3H11_3406 are separated by 88 nucleotides
Ac3H11_3406 and Ac3H11_3407 are separated by 36 nucleotides
Ac3H11_3403 - Probable signal peptide protein, at 80,643 to 81,374
_3403
Ac3H11_3404 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 81,600 to 83,144
_3404
Ac3H11_3405 - Transcriptional regulator, MarR family, at 83,302 to 83,808
_3405
Ac3H11_3406 - Acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit (EC 2.8.3.8), at 83,897 to 85,489
_3406
Ac3H11_3407 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 85,526 to 86,776
_3407
Group
Condition
Ac3H11
_3403
Ac3H11
_3404
Ac3H11
_3405
Ac3H11
_3406
Ac3H11
_3407
nitrogen source
Ammonium chloride (N)
-0.4
-0.7
-5.8
+0.6
-0.4
nitrogen source
L-Arginine (N)
-2.2
-0.3
-1.3
-0.0
+0.1
nitrogen source
L-Threonine (N)
-0.5
-1.0
-1.5
-0.0
-0.2
nitrogen source
L-Alanine (N)
+0.2
-0.0
-3.4
+0.2
+0.2
stress
Chlorite 0.1 mM
-0.3
-0.8
-0.5
-0.9
-0.2
nitrogen source
L-Serine (N)
-0.9
-0.5
-1.7
+0.3
-0.1
pH
LB, pH10
-0.8
-0.5
-1.3
+0.2
-0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.3
-2.6
+0.1
-0.2
stress
nitrite 10 mM
-0.1
-1.6
-0.3
+0.1
-0.6
carbon source
D-Ribose (C)
-0.0
-1.3
-1.3
+0.1
+0.2
lb
LB
+0.1
-1.9
-0.4
+0.3
-0.3
stress
perchlorate 25 mM
-0.2
-0.3
-1.0
-0.1
-0.4
carbon source
D-Ribose (C)
-0.1
-0.6
-1.4
+0.3
-0.2
phage
phage 93.1
-0.3
-0.7
-1.1
+0.1
+0.1
carbon source
D-Glucose (C)
-0.1
+0.4
-1.9
+0.1
-0.3
nitrogen source
L-Histidine (N)
-0.0
-0.4
-1.6
+0.2
+0.1
lb
LB
-0.1
-1.2
-0.3
+0.5
+0.2
pH
LB, pH10
+0.5
-1.1
-0.4
+0.2
-0.1
carbon source
a-Ketoglutaric (C)
-0.2
-1.0
+0.9
-0.2
-0.3
nitrogen source
L-Leucine (N)
-0.2
-0.6
-0.4
+0.4
+0.3
carbon source
pyruvate (C)
+0.5
-1.3
+0.5
-0.2
-0.1
nitrogen source
D-Alanine (N)
-0.3
+0.8
-0.2
+0.1
-0.7
nitrogen source
L-Isoleucine (N)
-0.0
-0.2
-1.0
+0.9
+0.3
carbon source
succinate (C)
-0.5
+1.1
-0.5
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.1
-0.9
+1.2
-0.1
-0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-0.5
-0.3
+0.9
-0.1
stress
D-Cycloserine 0.05 mg/ml
+0.3
+1.3
-1.4
+0.1
-0.1
phage
phage 93.2
+0.4
+0.3
-0.9
+0.5
-0.0
stress
Cisplatin 0.005 mg/ml
+0.5
-0.2
-0.8
+1.1
-0.1
stress
Cobalt chloride 0.4 mM
+0.2
+1.5
-0.2
+0.4
+0.1
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