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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3400 and Ac3H11_3401 are separated by 275 nucleotides
Ac3H11_3401 and Ac3H11_3402 are separated by 36 nucleotides
Ac3H11_3402 and Ac3H11_3403 are separated by 43 nucleotides
Ac3H11_3403 and Ac3H11_3404 are separated by 225 nucleotides
Ac3H11_3400 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 77,283 to 78,410
_3400
Ac3H11_3401 - Ammonium transporter, at 78,686 to 80,224
_3401
Ac3H11_3402 - Nitrogen regulatory protein P-II, at 80,261 to 80,599
_3402
Ac3H11_3403 - Probable signal peptide protein, at 80,643 to 81,374
_3403
Ac3H11_3404 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 81,600 to 83,144
_3404
Group
Condition
Ac3H11
_3400
Ac3H11
_3401
Ac3H11
_3402
Ac3H11
_3403
Ac3H11
_3404
nitrogen source
L-Arginine (N)
-0.0
-2.2
-1.9
-2.2
-0.3
carbon source
D-Lactate (C)
-5.6
-0.0
+0.0
-0.0
+0.4
carbon source
D-Lactate (C)
-4.5
+0.0
-0.3
+0.2
-0.3
carbon source
D,L-Lactate (C)
-4.9
+0.0
-0.1
+0.2
-0.1
carbon source
D,L-Lactate (C)
-4.8
+0.0
+0.0
+0.2
-0.0
carbon source
D-Lactate (C)
-4.0
+0.2
+0.0
+0.1
-0.4
nitrogen source
Uridine (N)
-0.4
-1.3
-1.1
-1.1
-0.0
nitrogen source
L-Serine (N)
+0.1
-0.7
-1.3
-0.9
-0.5
carbon source
D,L-Lactate (C)
-3.4
-0.1
-0.0
+0.1
+0.3
nitrogen source
Ammonium chloride (N)
-0.8
-0.5
-0.5
-0.4
-0.7
nitrogen source
L-Threonine (N)
+0.0
-0.5
-0.4
-0.5
-1.0
lb
LB
-0.4
+0.4
-0.7
+0.1
-1.9
carbon source
D-Ribose (C)
-0.3
-0.1
-0.5
-0.0
-1.3
lb
LB
+0.3
-0.3
-0.3
-0.1
-1.2
stress
Chlorite 0.1 mM
+0.3
-0.2
-0.6
-0.3
-0.8
carbon source
succinate (C)
+0.1
+0.1
-0.4
+0.0
-1.3
carbon source
L-Arabinose (C)
-1.1
-0.1
-0.6
+0.1
+0.2
stress
nitrite 10 mM
+0.4
-0.2
+0.1
-0.1
-1.6
phage
phage 93.1
+0.1
+0.3
-0.8
-0.3
-0.7
pH
LB, pH10
-0.2
-0.2
+0.6
-0.8
-0.5
carbon source
D-Glucose (C)
-0.3
+0.2
-1.1
-0.1
+0.4
carbon source
pyruvate (C)
-0.6
-0.1
+0.6
+0.5
-1.3
stress
Cobalt chloride 0.32 mM
+0.1
+0.1
-0.8
+0.3
-0.6
pH
LB, pH10
+0.6
-0.4
+0.2
+0.5
-1.1
carbon source
pyruvate (C)
-1.1
+0.1
+0.6
+0.3
+0.4
carbon source
succinate (C)
+0.2
-0.1
-0.1
-0.5
+1.1
nitrogen source
L-tyrosine (N)
-0.2
+1.2
+0.7
+0.1
-1.0
stress
copper (II) chloride 2 mM
+0.1
-0.5
+0.6
-0.2
+0.8
stress
Cobalt chloride 0.4 mM
+0.3
-0.0
+0.0
+0.2
+1.5
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.6
+4.8
+0.3
+1.3
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