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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3397 and Ac3H11_3398 are separated by 54 nucleotides
Ac3H11_3398 and Ac3H11_3399 are separated by 48 nucleotides
Ac3H11_3399 and Ac3H11_3400 are separated by 32 nucleotides
Ac3H11_3400 and Ac3H11_3401 are separated by 275 nucleotides
Ac3H11_3397 - Conserved domain protein, at 74,482 to 75,096
_3397
Ac3H11_3398 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 75,151 to 76,404
_3398
Ac3H11_3399 - Probable transmembrane protein, at 76,453 to 77,250
_3399
Ac3H11_3400 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 77,283 to 78,410
_3400
Ac3H11_3401 - Ammonium transporter, at 78,686 to 80,224
_3401
Group
Condition
Ac3H11
_3397
Ac3H11
_3398
Ac3H11
_3399
Ac3H11
_3400
Ac3H11
_3401
carbon source
D-Lactate (C)
+0.4
-4.3
-1.6
-5.6
-0.0
carbon source
D,L-Lactate (C)
-0.0
-4.4
-1.8
-4.9
+0.0
carbon source
D-Lactate (C)
+0.3
-4.6
-1.7
-4.5
+0.0
carbon source
D,L-Lactate (C)
+0.1
-4.3
-1.5
-4.8
+0.0
carbon source
D-Lactate (C)
+0.2
-4.0
-1.2
-4.0
+0.2
carbon source
D,L-Lactate (C)
+0.5
-2.6
-1.0
-3.4
-0.1
carbon source
L-Lactate (C)
+0.5
-1.1
-1.0
-1.4
-0.1
carbon source
L-Lactate (C)
-0.1
-1.1
-0.5
-1.2
+0.0
nitrogen source
Ammonium chloride (N)
-0.4
-0.1
-0.4
-0.8
-0.5
carbon source
L-Arabinose (C)
-0.0
-0.9
-0.0
-1.1
-0.1
carbon source
L-Lactate (C)
+0.2
-0.8
-0.6
-0.8
-0.1
nitrogen source
L-Arginine (N)
+0.1
+0.1
+0.1
-0.0
-2.2
carbon source
L-Arabinose (C)
+0.3
-0.6
-0.3
-0.8
-0.2
stress
nitrate 100 mM
-0.8
+0.0
-0.5
-0.5
+0.0
carbon source
L-Arabinose (C)
+0.2
-0.9
+0.1
-1.1
-0.0
carbon source
pyruvate (C)
+0.3
-0.9
+0.0
-1.1
+0.1
motility
inner cut, R2A soft agar motility assay
-0.5
-0.1
-0.5
-0.5
+0.0
nitrogen source
Uridine (N)
+0.0
-0.2
+0.3
-0.4
-1.3
nitrogen source
L-Isoleucine (N)
-0.2
-0.3
+0.1
-0.3
-0.7
carbon source
pyruvate (C)
+0.3
-0.5
-0.2
-0.6
-0.1
phage
phage 93.1
-0.6
-0.1
-0.7
+0.1
+0.3
carbon source
Tween 20 (C)
+0.4
-0.4
+0.2
-0.7
-0.2
nitrogen source
L-Leucine (N)
+0.4
+0.2
+0.4
-0.1
-0.7
nitrogen source
L-tyrosine (N)
-0.2
-0.0
+0.1
-0.2
+1.2
stress
Paraquat dichloride 0.01 mg/ml
+0.7
-0.2
+0.2
+0.3
-0.1
carbon source
L-Glutamine (C)
+0.4
+0.3
+0.4
+0.3
-0.2
pH
LB, pH10
+0.8
+0.2
+0.7
-0.2
-0.2
stress
Chlorite 0.1 mM
+0.8
+0.3
+0.2
+0.3
-0.2
lb
LB
+0.8
+0.2
+0.2
+0.3
+0.2
lb
LB
+0.7
+0.5
+0.3
+0.3
-0.3
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