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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_3357 and Ac3H11_3358 are separated by 160 nucleotides
Ac3H11_3358 and Ac3H11_3359 are separated by 1772 nucleotides
Ac3H11_3359 and Ac3H11_3360 are separated by 652 nucleotides
Ac3H11_3360 and Ac3H11_3361 are separated by 16 nucleotides
Ac3H11_3357 - Zn-dependent protease with chaperone function PA4632, at 37,868 to 38,722
_3357
Ac3H11_3358 - AmpG permease, at 38,883 to 40,379
_3358
Ac3H11_3359 - response regulatory protein, at 42,152 to 42,793
_3359
Ac3H11_3360 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 43,446 to 44,168
_3360
Ac3H11_3361 - Copper sensory histidine kinase CpxA, at 44,185 to 45,468
_3361
Group
Condition
Ac3H11
_3357
Ac3H11
_3358
Ac3H11
_3359
Ac3H11
_3360
Ac3H11
_3361
carbon source
D-Ribose (C)
-0.0
-2.2
-0.2
-0.2
-2.5
carbon source
D-Ribose (C)
+0.2
-2.3
-0.2
-0.7
-1.8
stress
Phosphomycin 0.06 mg/ml
+0.1
-3.8
+0.1
+0.1
-1.2
stress
Nickel (II) chloride 0.8 mM
-0.1
-3.0
-0.0
-0.7
-1.0
nitrogen source
Uridine (N)
+0.2
-0.8
-0.3
-0.4
-3.1
stress
Cisplatin 0.0025 mg/ml
+0.0
-0.5
+0.3
-0.2
-3.2
carbon source
propionate (C)
-0.2
-1.0
-0.3
-0.0
-2.1
motility
inner cut, R2A soft agar motility assay
-0.1
-0.4
-0.9
-0.6
-1.4
nitrogen source
L-Alanine (N)
-0.5
-1.5
-0.4
-0.8
-0.3
nitrogen source
L-Threonine (N)
-0.1
-1.0
+0.0
-0.4
-1.7
nitrogen source
D-Alanine (N)
-0.5
+0.1
-0.3
+0.4
-2.8
nitrogen source
Ammonium chloride (N)
-0.8
-0.8
-1.2
+0.6
-0.9
stress
Cephalothin 0.025 mg/ml
+0.0
-2.8
+0.0
-0.3
+0.2
stress
Aluminum chloride 2 mM
+0.3
-1.3
-0.1
+0.6
-2.3
carbon source
succinate (C)
+0.5
-2.7
+0.0
+0.5
-0.7
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.8
+0.2
-0.3
-1.7
carbon source
L-Malic (C)
+0.3
-1.4
-0.0
+0.0
-1.3
carbon source
L-Lactate (C)
+0.3
-1.2
-0.2
-0.3
-0.9
stress
Zinc 1 mM
+0.3
-0.1
+0.2
-0.4
-2.2
stress
perchlorate 25 mM
+0.3
-0.2
+0.2
-0.4
-2.1
carbon source
D,L-Lactate (C)
+0.4
-0.7
+0.2
-0.5
-1.5
motility
inner cut, R2A soft agar motility assay
-0.6
+0.1
+0.4
-0.4
-1.5
stress
Sisomicin 0.001 mg/ml
+0.3
-0.8
+0.2
+0.1
-1.7
carbon source
a-Ketoglutaric (C)
+0.4
-0.5
+0.2
-0.5
-1.2
carbon source
succinate (C)
+0.1
-2.5
-0.1
-0.5
+1.4
stress
Aluminum chloride 4 mM
+0.4
-0.9
+0.1
+0.7
-1.8
carbon source
D-Glucose (C)
+0.3
-1.6
-0.1
+0.7
-0.7
stress
Cisplatin 0.005 mg/ml
+0.6
-0.5
+0.0
+0.7
-1.3
pH
LB, pH10
+0.3
+1.3
-0.2
-1.0
-0.8
pH
LB, pH10
-0.1
+1.6
-0.3
-0.8
+0.5
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